Protocols

All (1474)Explore Protocol Graph

1,474 protocols

observationalstandardized

mark-recapture (Sciuridae)

A 20-year longitudinal study tracking individually marked female marmots through live-trapping, unique marking, and behavioral observations to quantify social relationships and lifetime fitness. Uses ...

demographic monitoring163 paperslive traps, ear tags...
observationalstandardized

pollinator observation

Systematic observation of plant-pollinator interactions along fixed transects with timed observations and selective insect capture for identification. Plants receiving sufficient visits are analyzed f...

pollination monitoring104 papersmeasuring equipment, nets...
observationalstandardized

focal animal sampling (Sciuridae)

Live-trapping and marking of yellow-bellied marmots followed by systematic focal behavioral observations to quantify time allocation to different behaviors including vigilance. Uses established ethogr...

demographic and behavioral monitoring98 papersTomahawk live traps, metal tags...
observationalstandardized

Bees per person hour sampling

Systematic observation of plant-pollinator interactions along established transects with standardized time intervals to capture natural temperature variation. Pollinator specimens collected for identi...

behavioral sampling75 papersmeasuring tape, field notebooks...
analyticalstandardized

Hemacytometer pollen counting

Collection and microscopic analysis of pollen grains deposited on wildflower stigmas using pink fuchsin gel mounting and reference collection for identification. Quantifies both conspecific and hetero...

microscopy49 paperstweezers, small eppendorf tubes...
samplingstandardized

Belt transect method

Belt transect method for censusing lupine populations and collecting inflorescences for morphological analysis across sympatric and allopatric sites. Combines population surveying with systematic flor...

botanical survey48 papersGPS, tape for marking...
samplingstandardized

quadrat sampling method

Measurement of plant species-specific cover, identification of focal species, and collection of plant biomass and functional traits including specific leaf area and leaf dry matter content.

vegetation monitoring48 papersmeasurement tools for biomass
observationalstandardized

Flowering phenology census

Tagged individual plants are monitored twice weekly throughout the growing season to record bloom start dates, bloom end dates, and total flower production. This provides individual-level phenological...

phenological tracking47 paperssoft wire, colored plastic beads...
observationalstandardized

Social network analysis (Sciuridae)

Direct observation of social interactions using binoculars and spotting scopes during peak activity periods. Interactions are classified as affiliative or agonistic and used to construct weighted dire...

behavioral monitoring47 papersbinoculars, spotting scopes...
experimentalstandardized

Artificial nectar robbing

A method to experimentally add nectar rewards to naturally pollen-only rewarding flowers by depositing measured volumes of artificial nectar solution onto flower structures accessible to pollinators. ...

resource manipulation44 papersmicro-pipettes, artificial nectar solution...
measurementstandardized

Bagged flower nectar accumulation

Comprehensive measurement of floral traits (corolla dimensions, anther insertion, petal color, nectar production) and vegetative traits (specific leaf area, trichome density, water-use efficiency) on ...

morphological43 papersmeasurement tools for corolla dimensions, reflectance measurement equipment...
samplingstandardized

benthic sampling

Plastic pan traps with soapy water deployed along stream transects to capture terrestrial invertebrates falling into or near the river. Traps are pooled by transect and processed for taxonomic identif...

terrestrial invertebrate monitoring39 papersplastic pan traps, metal poles...
experimentalstandardized

pollination exclusion experiment

Experimental addition of outcross pollen to flowers to test whether natural pollination limits plant reproductive success, comparing reproductive output between hand-pollinated and naturally pollinate...

pollen limitation test36 paperscamel hair paintbrush, forceps...
experimentalstandardized

common garden experiment (Brassicaceae)

A large-scale reciprocal transplant experiment across five elevational gardens with factorial snow and temperature manipulations to test local adaptation and evolutionary rescue potential under climat...

climate adaptation34 papersOpen-top chambers, Snow removal tools...
measurementstandardized

browse damage assessment

Twice weekly censuses recording plant vital status, reproductive phenology, and fitness components including flower and fruit production. Weekly assessments of herbivore damage quantify leaf area remo...

demographic monitoring31 paperscalipers, measuring tape...
measurementstandardized

Flight initiation distance measurement (Sciuridae)

Systematic measurement of antipredator escape behavior by approaching focal individuals at standardized speed and recording distances at key behavioral response points. Includes observation of social ...

behavioral assay30 papersbinoculars, 15-45x spotting scope...
experimentalstandardized

Experimental predator manipulation with colony establishment

Controlled experiment manipulating predator presence by establishing artificial aphid colonies, protecting them from natural predators, then adding lygus bugs to treatment plants. Includes ant bridge ...

predation experiment29 papersrandom number generator, paint brush...
experimentalstandardized

Factorial environmental stress experiment (Limnephilidae)

2x2 factorial design manipulating temperature and conductivity to test environmental drying cues on caddisfly development and survival. Uses shade manipulation and salt additions to simulate pond dryi...

environmental physiology29 papersshade cloth, NaCl solution...
samplingstandardized

pitfall trapping (Formicidae)

Standardized 2-hour baiting experiments using 5 different resource types arranged in pentagonal plots to sample ant communities and assess dominance patterns. Records ant abundance and identity at reg...

community sampling29 papersplastic discs (6 cm diameter), canned tuna in water...
measurementstandardized

seed count and mass measurement

Comprehensive evaluation of seed production including total fruit counts, viable seed counts per fruit, individual seed mass measurements, and visual/physical viability assessment. Combines quantitati...

reproductive output28 papersgreen mesh jewelry bags, precision balance...
measurementstandardized

soil respiration measurement

Continuous measurement of soil CO2 concentrations at multiple depths using automated sensors to calculate soil CO2 fluxes via gradient approach. Includes soil temperature and moisture monitoring for e...

biogeochemical monitoring28 papersDecagon Devices 5TE probes, Vaisala GMP222/GMP221 CO2 probes...
measurementstandardized

Specific Leaf Area (SLA)

Comprehensive measurement of vegetative traits including specific leaf area, trichome density, water use efficiency, and percent water content from field-collected leaves using scanning, drying, weigh...

morphological and physiological27 paperscoin envelopes, cooler...
observationalstandardized

mark-recapture

Beetles were captured using speed nets, marked with tungsten needle dot codes on elytra, and released for recapture monitoring to estimate population sizes and dispersal patterns. Elytral condition wa...

demographic monitoring27 paperslong handled speed net, plastic containers for transport...
samplingstandardized

mark-recapture (Ambystomatidae)

Annual capture-recapture surveys over 24 years to track individual survival, growth, reproduction and developmental pathways in a polyphenic salamander population. Combines individual marking with det...

demographic monitoring27 paperslong handled net, Weatherport...
samplingstandardized

Refractometric nectar analysis

A field-based protocol for extracting nectar from flowers that have been exposed to bee visitation, then quantifying ethanol content using enzyme-based assays. Flowers are pre-isolated to prevent nect...

chemical sampling25 papersbags for flower isolation, 10 μL microcapillary pipettes...
samplingstandardized

drive-point piezometer groundwater sampling

Systematic collection of groundwater samples at regular depth intervals using sediment coring and peristaltic pumping, with immediate field analysis and laboratory chemical characterization. Targets t...

hydrogeochemical25 paperssediment coring device, peristaltic pump...
analyticalstandardized

McGonigle method (Poaceae)

Microscopic assessment of arbuscular mycorrhizal fungal colonization and other fungal colonization of plant roots using crosshair intercept method and grid line-intercept method for soil fungi.

microscopy23 papersmicroscope, grid line-intercept setup
analyticalstandardized

Blumstein & Daniel transmission fidelity technique (Sciuridae)

Digital recording and spectral analysis of alarm vocalizations to quantify entropy and goodness of pitch as measures of call structure and acoustic properties.

acoustic analysis22 papersSony PCM digital recorder, Audix OM-3xb microphones...
observationalstandardized

Holshof & Swenson trait sampling protocol

Systematic monitoring of plant disease dynamics across elevation gradient to capture environmental variation effects. Involves establishment of standardized transects with complete plant population ma...

field ecology22 papersGarmin GPS units, environmental sensors...
experimentalstandardized

Snowmelt manipulation using shade cloths

Shade cloths suspended 3m above treatment plots accelerate snowmelt by 5-7 days when snowpack reaches ~1m depth, simulating earlier spring snowmelt conditions. Cloths removed after complete treatment ...

climate manipulation22 papersshade cloths, 3m rebar stakes...
samplingstandardized

gravimetric method

Multi-temporal soil moisture measurements using TDR probe combined with soil coring and laboratory processing to determine moisture content, bulk density, and texture characteristics across environmen...

soil analysis22 papersField Scout TDR150 soil moisture probe, soil corer...
computationalstandardized

LTRE analysis (Sciuridae)

Stage-mass-structured IPMs incorporating seasonal demographic transitions and environmental stochasticity for population viability analysis. Uses prospective perturbation analysis and stochastic proje...

population modeling21 papersIPM construction algorithms, numerical integration tools...
experimentalstandardized

Burying beetle habitat reproduction experiment (Silphidae)

Field experiment comparing reproductive success of burying beetle species across habitat types using breeding pairs, mouse carcasses, and environmental monitoring. Measures burial success, development...

behavioral ecology20 paperstemperature sensors, soil moisture sensors...
analyticalstandardized

DNA metabarcoding

Surface sterilization of plant tissues followed by DNA extraction and high-throughput sequencing of the ITS region to characterize fungal endophyte communities. Community composition and diversity met...

molecular20 papersplastic resealable bags, −20°C freezer...
experimentalstandardized

Microcosm predator avoidance bioassay

Controlled experimental system using circular plastic tanks to test mayfly larval responses to chemical cues by measuring foraging behavior on substrate surfaces before and after treatment application...

behavioral19 paperscircular aerated plastic tanks, stream water supply system...
experimentalstandardized

Open-top chamber warming

A 2×2 factorial experiment combining passive warming using open-top chambers with dominant plant species removal across elevational gradients at multiple global mountain sites to test interactive effe...

climate manipulation19 paperstransparent hexagonal open-top chambers (OTCs), iButtons (Thermochron & Hygrochron ibuttons, Maxim Integrated Corp., San Jose, CA, USA)...
measurementstandardized

automated weather monitoring (Sciuridae)

Integration of temperature, precipitation, and snow cover data from multiple weather stations and remote sensing platforms to characterize environmental conditions at marmot colony sites.

environmental monitoring19 papersEPA CASTNET weather station GTH-161, CoCoral5 weather station CO-GN-18...
laboratorystandardized

microsatellite parentage assignment (Sciuridae)

DNA extraction from hair samples followed by microsatellite genotyping to determine parentage relationships and construct molecular pedigrees for quantitative genetic analysis.

molecular19 papersQIAmp Mini Kit by Qiagen Inc, GENEMAPPER software...
laboratorystandardized

radioimmunoassay (Sciuridae)

Progesterone concentrations measured using radioimmunoassay with tritiated progesterone, ether extraction, and antibody binding assay. Standard curves and duplicate samples used for quantification.

physiological19 paperstritiated progesterone (#337, G.D. Niswender, Colorado State University, Fort Collins, CO), antibody at working dilution of 1:6000...
experimentalstandardized

Grasshopper feeding bioassay for plant defense

Choice feeding trials where individual grasshoppers are offered leaves from different plant treatments to measure relative herbivory rates. Herbivory is quantified by measuring leaf area consumed usin...

herbivory measurement18 papersarenas, Gothic Research Center...
experimentalstandardized

Split-plot snowmelt and precipitation manipulation experiment

A factorial field experiment manipulating snowmelt timing using black shade cloth and summer precipitation using rainout shelters in a split-plot design to simulate climate change effects.

climate manipulation18 papersblack shade cloth, rainout shelter...
experimentalstandardized

Y-tube olfactometer assay

Controlled choice experiments measuring butterfly oviposition preference between plant species using matched plant materials in screen cages. Preference quantified as proportion of eggs laid on test p...

behavioral18 papers0.23 × 0.23 × 0.23 m screen cages, 10-cm-square pots...
observationalstandardized

Alpine plant phenology monitoring with snowmelt timing

Weekly monitoring of alpine plant flowering phenology coupled with snowmelt date recording to assess environmental effects on plant reproductive timing. Focuses on species-specific responses to fine-s...

phenological monitoring17 papersfield notebooks, GPS units...
observationalstandardized

Trap-nest sampling (Megachilidae)

Installation and monitoring of artificial wooden nesting-blocks with multiple cavity sizes to track solitary bee nesting activity, timing, and reproductive success. Involves regular visual monitoring ...

demographic monitoring17 paperswooden blocks, drill...
experimentalstandardized

Infrared heating manipulation

Infrared heaters suspended above experimental plots to simulate warming effects on montane vegetation communities across moisture gradients. Heating power adjusted over time to maintain consistent war...

climate warming16 papersinfrared heaters, infrared heating lamps
samplingstandardized

Loss-on-ignition method

Systematic excavation of 1-meter soil pits with depth-stratified sampling at 10 cm intervals for soil organic carbon, nitrogen, and dissolved organic carbon analysis. Includes soil profile description...

biogeochemical16 papersshovels, D5600 Nikon camera...
analyticalstandardized

correlation analysis

Statistical analysis using mixed effects models to evaluate relationships between plant clumping treatment and temperature responses while accounting for random effects of individual plants and sampli...

statistical modeling16 papers
experimentalstandardized

reciprocal transplant experiment

Multi-site common garden experiment using controlled crosses to partition genetic and environmental variance in vegetative and floral traits across a hybrid zone. Seeds from multiple genetic families ...

quantitative genetics16 papersshade-cloth canopy, fencing materials...
measurementstandardized

5TE soil sensor monitoring

Continuous automated monitoring of soil temperature, moisture, and gas concentrations at multiple depths using sensor arrays. Provides high-resolution temporal data on soil microenvironmental conditio...

environmental15 papersVWC EC-5 Meter Group Pullman WA sensors, matric potential kPa Teros 21 sensors...
analyticalstandardized

Forest inventory plot sampling

Uses full-waveform LiDAR returns processed through adaptive deconvolution and individual tree detection algorithms to map forest structure metrics including tree density, height distributions, and bas...

remote sensing15 papersOptech Gemini discrete LiDAR sensor, waveform digitizer...