Protocols

All (1474)Explore Protocol Graph

114 protocols

observationalstandardized

mark-recapture (Sciuridae)

A 20-year longitudinal study tracking individually marked female marmots through live-trapping, unique marking, and behavioral observations to quantify social relationships and lifetime fitness. Uses ...

demographic monitoring163 paperslive traps, ear tags...
observationalstandardized

pollinator observation

Systematic observation of plant-pollinator interactions along fixed transects with timed observations and selective insect capture for identification. Plants receiving sufficient visits are analyzed f...

pollination monitoring104 papersmeasuring equipment, nets...
observationalstandardized

focal animal sampling (Sciuridae)

Live-trapping and marking of yellow-bellied marmots followed by systematic focal behavioral observations to quantify time allocation to different behaviors including vigilance. Uses established ethogr...

demographic and behavioral monitoring98 papersTomahawk live traps, metal tags...
observationalstandardized

Bees per person hour sampling

Systematic observation of plant-pollinator interactions along established transects with standardized time intervals to capture natural temperature variation. Pollinator specimens collected for identi...

behavioral sampling75 papersmeasuring tape, field notebooks...
observationalstandardized

Flowering phenology census

Tagged individual plants are monitored twice weekly throughout the growing season to record bloom start dates, bloom end dates, and total flower production. This provides individual-level phenological...

phenological tracking47 paperssoft wire, colored plastic beads...
observationalstandardized

Social network analysis (Sciuridae)

Direct observation of social interactions using binoculars and spotting scopes during peak activity periods. Interactions are classified as affiliative or agonistic and used to construct weighted dire...

behavioral monitoring47 papersbinoculars, spotting scopes...
observationalstandardized

mark-recapture

Beetles were captured using speed nets, marked with tungsten needle dot codes on elytra, and released for recapture monitoring to estimate population sizes and dispersal patterns. Elytral condition wa...

demographic monitoring27 paperslong handled speed net, plastic containers for transport...
observationalstandardized

Holshof & Swenson trait sampling protocol

Systematic monitoring of plant disease dynamics across elevation gradient to capture environmental variation effects. Involves establishment of standardized transects with complete plant population ma...

field ecology22 papersGarmin GPS units, environmental sensors...
observationalstandardized

Alpine plant phenology monitoring with snowmelt timing

Weekly monitoring of alpine plant flowering phenology coupled with snowmelt date recording to assess environmental effects on plant reproductive timing. Focuses on species-specific responses to fine-s...

phenological monitoring17 papersfield notebooks, GPS units...
observationalstandardized

Trap-nest sampling (Megachilidae)

Installation and monitoring of artificial wooden nesting-blocks with multiple cavity sizes to track solitary bee nesting activity, timing, and reproductive success. Involves regular visual monitoring ...

demographic monitoring17 paperswooden blocks, drill...
observationalstandardized

Point count surveys

Systematic point count surveys conducted along an elevational gradient to assess current species distributions. Each site has four sampling points with standardized observation periods, replicated acr...

range assessment15 papersGeoXT unit equipped with Terrasync software, Geo7X unit equipped with Terrasync software...
observationalstandardized

automated temperature logging

Time-lapse camera monitoring of aquatic insect landing and oviposition behavior on paired emergent rocks with different embedding characteristics. Combines behavioral observation with egg mass countin...

behavioral monitoring14 papersAphidius 230 time-lapse cameras, rebar poles...
observationalstandardized

Seed predation assessment (Polemoniaceae)

Weekly monitoring of fly oviposition on flowers and assessment of fruit damage by predispersal seed predators including fly larvae and caterpillars to quantify reproductive success and seed predation ...

demographic monitoring13 paperscollection containers
observationalstandardized

NOAA weather station monitoring

Long-term systematic collection of first sighting and median activity dates for plants, insects, mammals, amphibians and birds in a high-elevation montane ecosystem. Standardized protocols track flowe...

phenological monitoring12 paperssystematic observation protocols
observationalstandardized

Elevational gradient phenotypic survey of Thlaspi arvense (Brassicaceae)

Weekly monitoring of plant phenology, morphological traits, and density across an elevational gradient to assess phenotypic plasticity in response to environmental conditions. Uses standardized phenol...

demographic monitoring9 papersGeoXT GPS device, 1m² quadrat frames...
observationalstandardized

Territory mapping (Aves)

Territory delineation by following singing males and recording GPS coordinates of singing locations to map territory boundaries and calculate area and perimeter.

territorial behavior9 papersGPS unit, binoculars...
observationalstandardized

focal animal sampling (Limnephilidae)

Individual caddisflies are observed for fixed time periods to record movement patterns, social interactions, and aggressive behaviors. Follows established protocols for recording specific behaviors li...

behavioral monitoring9 papersstopwatch for timing
observationalstandardized

radio-telemetry (Sciuridae)

Intensive monitoring of juvenile emergence and movements using daily visual observations and grid-based distance calculations to characterize dispersal timing, distance, and settlement patterns.

behavioral monitoring8 papersbinoculars, 7m × 7m grid map system
observational

Visual and camera trap survey of small mammals

Combined direct visual observation during peak activity periods with motion-activated camera bucket traps to determine species presence/absence in meadow habitats. Camera traps used small entry holes ...

wildlife monitoring7 papersbinoculars, GPS unit...
observational

Camera trap hummingbird visitation monitoring (Aves)

Time-lapse photography of individual flowers using motion-activated cameras to capture and quantify hummingbird feeding visits. Combined with machine learning image processing to automate detection.

behavioral monitoring6 papersBrinno TLC200 cameras, waterproof cases...
observational

JWatcher behavioral analysis

Systematic recording and quantification of animal behaviors using standardized ethogram categories and time budget analysis with JWatcher software.

behavioral quantification6 papersDigital recorder, JWatcher 1.0 software
observationalstandardized

SNOTEL and cooperative observer networks

Comprehensive deployment of precipitation, atmospheric, and surface energy budget sensors across elevation and topographic gradients in complex terrain. Network includes core sites with full instrumen...

environmental monitoring6 papersSnow-Level Radar (SLR), precipitation gauges...
observationalstandardized

Systematic grid demographic monitoring of aspen

Systematic establishment of gridded plots across watersheds followed by long-term monitoring of tagged individual trees for mortality and recruitment rates. Combined with environmental characterizatio...

demographic monitoring6 papersGPS units for plot positioning, tree tags...
observationalstandardized

Predation risk assessment through predator counts (Sciuridae)

Systematic predator monitoring during behavioral observations to quantify predation pressure. Creates predation index by dividing predator counts by observation time per colony site.

predation ecology5 papersbinoculars or observation equipment (not specified)
observationalstandardized

Reproductive success assessment in marmots (Sciuridae)

Assessment of female reproductive success through behavioral observation of pup emergence from natal burrows and pedigree analysis to assign offspring to mothers.

demographic monitoring5 papersbehavioral observation records, comprehensive pedigree database
observationalstandardized

radiotelemetry (Sciuridae)

Colony sites are visited daily starting April 19th each year to record the first emergence date of individual marmots from hibernation through direct observation and sign detection.

phenological monitoring5 papersbinoculars, spotting scopes
observational

Elevation gradient flower color polymorphism survey (Brassicaceae)

Systematic assessment of flower color variation across environmental gradients using standardized color categories and plot-based sampling. Combines phenotypic scoring with environmental variable meas...

phenotypic variation monitoring4 papersmeasuring tape, color categorization guide...
observationalstandardized

VISSS snowfall particle analysis

Video In Situ Snowfall Sensor measurements providing particle size distributions, complexity, and fall velocity measurements to validate radar-derived microphysical processes. Uses high-speed video ca...

in situ measurements3 papersVideo In Situ Snowfall Sensor (VISSS)
observational

Ant identification and behavioral observation on sunflowers (Asteraceae)

Field-based study of ant interactions with pollinators on Helianthella quinquenervis, involving ant identification and behavioral observations. Protocol development included ant keying skills and hone...

behavioral ecology2 papersidentification keys, honey...
observational

Benthic diatom mat field survey

Field surveys of river systems to document the relationship between diatom cellular division rates and mat coverage patterns under natural conditions.

field survey2 papers
observational

Breeding Bird Survey

Annual one-day survey of breeding birds conducted in mid-June where multiple observer groups systematically record all birds detected by sight or sound across five areas in Gothic, Colorado over a 5-h...

community monitoring2 papersfield observation equipment (not specified)
observationalstandardized

Field survey of leaf miner damage patterns (Drosophilidae)

Systematic field survey of natural herbivore damage patterns across different leaf positions on host plants. Quantifies within-host foraging preferences in natural populations.

damage assessment2 papersfield survey materials
observational

Multi-site flax rust epidemic monitoring

Weekly monitoring of flax rust disease prevalence across multiple wild flax populations to track epidemic progression and relate it to local environmental conditions over multiple growing seasons.

disease surveillance2 papersplot markers, field recording materials
observational

Ordinal rust infection severity assessment

Weekly assessment of fungal rust infection using a 6-class ordinal scale from absent (0) to 75-100% infected (5), with infection location recorded.

disease monitoring2 papershand sanitizer
observational

Potter trap behavioral assessment of mountain sparrows

Standardized protocol for observing and scoring trap behavior of Zonotrichia leucophrys oriantha using Potter traps with systematic behavioral categorization and activity indexing. Birds observed for ...

behavioral monitoring2 papersPotter traps, white proso millet...
observational

Trophic interaction field observation

Systematic field observation of trophic interactions between organisms, primarily plants and insects, with rotating temporal sampling across multiple sites to record feeding relationships and interact...

behavioral observation2 papers
observational

Video documentation of nest predation

Deployment of camouflaged security cameras or GoPro cameras near nests to record predation events, with careful timing to minimize nest abandonment and standardized recording parameters.

behavioral monitoring2 paperscolor CCD IR security camera, GoPro Session camera...
observational

Willey-Willey grasshopper census method (Acrididae)

Systematic walking surveys through grasshopper habitat to count and score individuals for wing color morphs (orange vs yellow) across multiple populations and years. Researchers targeted 100 individua...

demographic monitoring2 papersU.S. Geological Survey 7.5-minute topographic maps, field data sheets
observationalstandardized

capture-recapture

Individual animals are uniquely marked and tracked through capture-recapture over multiple decades to estimate survival, reproduction, and productivity parameters. This generates individual life histo...

demographic monitoring2 papersmarking tags, capture equipment
observational

focal animal sampling (Aves)

Direct observation of individual birds during foraging attempts, recording foraging success and behavior, followed by detailed vegetation structure surveys of the exact foraging microhabitat. Uses sta...

behavioral ecology2 papersbinoculars, flags...
observational

nest monitoring

Standard protocol for locating Mountain White-crowned Sparrow nests using behavioral cues and rope-dragging, followed by regular monitoring every 2-5 days throughout the breeding cycle.

demographic monitoring2 papersaluminum cans, rope...
observational

pond hydroperiod classification

Classification of ponds into permanent, semi-permanent, and temporary categories based on historical drying patterns and hydroperiod duration from long-term data records.

habitat classification2 papersGPS units, GIS software...
observational

Alert distance measurement

Field measurement of the distance at which birds first orientate to an approaching threat, used as a proxy for detection distance across multiple species and geographic regions.

behavioral response1 paperPublished literature sources, Species databases
observational

Alpine pond bird behavior surveys (Aves)

Systematic 10-minute bird observations at pond sites with defined zone-based recording of species identity, behaviors, and time spent. Includes 5-minute settling period and standardized behavior categ...

behavioral monitoring1 paperobservation recording materials, timing devices...
observational

Art-science collaboration documentation (Pinaceae)

A systematic collection and presentation of case studies from art-science collaborative projects presented at a scientific conference. The method involves organizing presentation sessions, collecting ...

case study compilation1 paperpresentation equipment for Ignite format, digital image collection...
observational

Atmospheric Radiation Measurement (ARM) program

Continuous measurement of aerosol optical properties and cloud condensation nuclei concentrations using standardized ARM instrumentation across multiple global sites representing diverse atmospheric c...

atmospheric monitoring1 paperCloud Condensation Nuclei counter (CCNc), nephelometer...
observational

Autonomous surface flux station deployment

Deployment of autonomous atmospheric surface flux stations (ASFSs) for continuous measurement of surface energy balance components including meteorology, radiation, and turbulent fluxes in remote high...

meteorological monitoring1 paperASFS-30, ASFS-50...
observational

Bumblebee colour pattern morphological assessment (Apidae)

Systematic scoring of hair colour patterns on bumblebee specimens using standardized binary characters for body banding and tail coloration to assess polymorphism across species.

morphological1 paperspecimen examination tools
observational

Common garden experiments (Pinaceae)

Long-term studies that monitor phenotypes and fitness components in natural populations over multiple generations to detect climate-related changes and assess genetic variation underlying climatic ada...

long-term monitoring1 paper
observational

Daily roadkill monitoring of small mammals (Sciuridae)

Daily walking surveys along a road transect to detect, identify, tag and remove small mammal roadkill carcasses within hours of detection. Compared detection efficiency against simulated weekly survey...

mortality monitoring1 paperCounty Road 317, ear tags...