Protocols

All (1474)Explore Protocol Graph

189 protocols

experimental

Common garden inbreeding coefficient comparison (Brassicaceae)

Comparison of fitness traits between naturally inbred and outbred plant populations grown in a common garden environment to test for inbreeding depression. Uses matched pairs design with populations p...

fitness comparison1 paperdigital caliper, visual assessment tools...
experimental

Comparative anesthesia efficacy testing in amphibians

Standardized protocol for comparing anesthetic effectiveness by measuring induction and recovery times in salamanders using righting reflex as the endpoint. Animals are immersed in anesthetic solution...

anesthetic evaluation1 paperSigma-Aldrich MS-222, Sigma-Aldrich benzocaine...
experimental

Constant humidity chamber validation for amphibian biophysical models

Construction and testing of controlled humidity chambers using saturated salt solutions to maintain precise relative humidity conditions for validating biophysical models against live amphibians

environmental control1 paperplastic storage containers, saturated salt solutions...
experimental

Controlled competition manipulation (Apidae)

Bumble bee competition levels are experimentally manipulated in controlled flight cage environments by varying the number of conspecific and heterospecific co-visitors while recording focal bee foragi...

behavioral experiment1 paperlarge flight cage, WeatherPort Shelter Systems Delta Colorado
experimental

Controlled freezing stress treatment (Liliaceae)

In situ freezing treatment using liquid nitrogen and heat exchanger to gradually cool plant tissues to -30°C. Designed to simulate natural freezing events while allowing controlled temperature ramping...

environmental stress1 papercylindrical styrofoam chambers, 70 L Dewar flask...
experimental

Controlled greenhouse warming experiment with hemiparasite-host interactions (Orobanchaceae)

A factorial greenhouse experiment testing effects of 3°C warming and species interactions on biomass production of a hemiparasitic plant and its grass host. Plants were grown in ambient vs. warmed gre...

climate manipulation1 papergreenhouse bays, supplemental lights (Pro 1000° 120/240 DE US, Gavita Holland bv)...
experimental

Controlled neighbor density pot experiment (Brassicaceae)

Neighbor vegetation was planted around potted B. stricta plants at controlled densities (0, 25, 50, 75, 100%) within a 5 cm radius to test causal relationships between neighbor density and plant fitne...

plant interaction manipulation1 paper4x4 inch pots, Miracle Grow Potting Mix soil...
experimental

Controlled temperature development experiment (Animalia)

Laboratory-controlled temperature treatments using paired experimental boxes in contrasting thermal environments to test effects of temperature on insect development rates and voltinism.

thermal manipulation1 paperwooden boxes, mesh...
experimental

Controlled transplant treatment experiment (Rosaceae)

Controlled experiment testing effects of different soil treatments on transplant survival, growth, and reproductive success with daily watering and weekly monitoring.

soil amendment1 paperdigging tools, Miracle-Gro fertilizer...
experimental

Critical thermal minimum assay (Drosophilidae)

Laboratory assays measuring critical thermal minimum (CTmin) and chill coma recovery time (CCRT) to quantify cold tolerance in Drosophila populations.

physiological1 paperparafilm tubes, glycol-water mixture...
experimental

Cross-resistance sequential infection experiment (Brassicaceae)

Sequential exposure of plants to different natural enemies to test for cross-resistance effects mediated by plant defense pathways, measuring performance of second attacker.

plant defense1 paperisolate 12 bacteria, 10 mM MgSO4 buffer
experimental

Daily forced flight treatment for butterfly energetics (Animalia)

Daily forced flight protocol involving 3 × 4 minute flight bouts with rest periods, stimulated by gentle brushing, to experimentally increase energy expenditure in butterflies. Control group remains i...

exercise manipulation1 paper30 × 30 × 30 cm cage, fine paintbrush...
experimental

Diatom transplantation and nutrient exposure experiment (Protista)

Controlled exposure of D. geminata cells to different water sources with varying nutrient levels to test cellular division and mat formation responses. Involves transplanting cells between environment...

physiological response1 paperMicroscopy equipment
experimental

Distance gradient sampling design (Mammalia)

Systematic placement of monitoring devices along transects perpendicular to trails at fixed distances to assess the spatial effect of human disturbance on wildlife communities.

spatial sampling1 paperHunt traps, camera traps
experimental

Drought stress manipulation of host plants (Pieridae)

Plants are subjected to controlled drought conditions by restricting watering frequency and monitoring soil moisture levels. Treatment groups include normal watering, drought-stressed, and drought-rec...

plant stress treatment1 paperfour-by-four-inch pots, plastic bags...
experimental

Dual-domain column redox microsite simulation

Laboratory column experiments with embedded artificial reducing microsites in natural sediments under controlled flow conditions to test anoxic microsite detection methods.

controlled environment1 papercolumns, peristaltic pump...
experimental

Elevation gradient herbivory communication experiment (Asteraceae)

Experimental manipulation of leaf damage combined with air flow restriction to test volatile-mediated anti-herbivory communication across elevation gradients. Uses artificial leaf clipping with baggin...

plant defense communication1 paperclipping tools, opaque plastic bags...
experimental

Environmental driver manipulation (Brassicaceae)

Manipulative treatments using rainout shelters to control soil moisture and insecticide applications to control herbivory levels, allowing quantification of driver effects on plant performance.

climate manipulation1 paperrainout shelters, below-ground barriers...
experimental

Experimental seed introduction with toothpick marking (Primulaceae)

Experimental transplant of seeds using toothpick adhesion method to precisely track emergence and early survival. Seeds adhered to wooden toothpicks for accurate placement and monitoring in experiment...

life stage manipulation1 paper15-cm × 15-cm plastic grids, wooden toothpicks...
experimental

Experimental wing clipping for damage simulation (Nymphalidae)

Controlled removal of wing tissue from distal edges to simulate wing wear while maintaining wing aspect ratio. Used to test effects of wing damage on flight performance.

physical manipulation1 paperscissors
experimental

Factorial arthropod manipulation on rabbitbrush (Formicidae)

Controlled manipulation of foraging ant access and treehopper density on individual rabbitbrush plants to test trophic cascade effects. Used exclusion barriers and manual abundance adjustments in a fa...

species interaction1 papersticky 'tanglefoot' barriers (Scotts Company, Marysville, OH), vegetation trimming tools
experimental

Factorial field manipulation of plant antagonists (Polemoniaceae)

Three-way factorial field experiment manipulating herbivory (clipping), nectar robbing (artificial hole-cutting and nectar removal), and seed predation (egg removal) to test additive vs. non-additive ...

field manipulation1 paperscissors, thin metal stakes...
experimental

Flow-through column weathering experiments

Laboratory column experiments using synthetic rainwater to quantify steady-state solute release rates from crushed rock samples. Samples are wet-packed in vertical columns and synthetic rainwater is p...

solute release quantification1 paperFisher Scientific FH100 peristaltic pump, clear acrylic polycarbonate columns...
experimental

Genome-wide Association Study (Plantae)

Researchers employ manipulative provenance trials with pedigreed populations or GWAS panels planted into multiple gardens arrayed across environmental gradients, manipulating key environmental factors...

environmental manipulation1 paper
experimental

Individual chamber rearing system (Phryganeidae)

Individual larvae were reared in floating screen chambers that allowed natural pond conditions while preventing mixing between treatments.

controlled rearing1 paper10 cm window screen, duct tape...
experimental

Insect-plant relationship verification

Experimental approach using stocking to encase plants with apparent egg sacks or larvae, and growing galls in moisture-controlled conditions to verify trophic relationships.

rearing experiment1 paperstocking, plastic bags
experimental

Laboratory shale leaching experiments

Controlled laboratory experiments using pulverized Mancos Shale under simulated groundwater conditions to investigate thorium release mechanisms under different redox conditions.

geochemical1 paperMilliQ water system, 50 mL vials...
experimental

Larval cross-fostering experiment for social insect colonies (Formicidae)

Transfer of third-instar larvae between ant colonies to manipulate nestmate relatedness and test worker responses to genetic cues in sex allocation decisions.

behavioral manipulation1 paperlarvae handling tools, collection containers
experimental

Larval dietary restriction in Lepidoptera (Nymphalidae)

Controlled food deprivation during larval development by reducing feeding frequency to half that of controls, creating 3-4 periods of 24h food absence. Used to simulate natural resource limitation dur...

developmental manipulation1 papercylindrical glass cages, potted Viola sororia plants
experimental

Larval survival tracking on multiple host species (Pieridae)

Eggs and larvae were monitored from oviposition through pre-pupal development on native and non-native host plants to quantify survival differences and fitness consequences of host choice.

demographic monitoring1 paperIndividual cages, 1-m² grid
experimental

Male mating competition arena trials (Perlodidae)

Controlled trials placing two males of different sizes with one female in observation arenas to determine effects of male body size on reproductive success.

behavioral assay1 paperobservation arena (45 × 22 × 25 cm), mesh top...
experimental

Matched-pair mine contamination study design (Brassicaceae)

Paired study design comparing contaminated mine sites with nearby uncontaminated control sites matched for similar vegetation patterns and environmental conditions. Multiple response variables measure...

environmental comparison1 paper
experimental

Mesh-bag herbivore performance bioassay (Valerianaceae)

Caterpillars were enclosed in mesh bags on plant inflorescences to measure constitutive plant defenses while excluding natural enemies. Development time, pupal mass, mortality and parasitism rates wer...

herbivory experiment1 papersealed mesh bags, scale...
experimental

Nanda-Hamner experiment (Drosophilidae)

Experimental protocol to test for circadian rhythmicity in photoperiodic responses by exposing insects to constant day length (12h) with varying night lengths to create non-24h photoperiods, then meas...

photoperiodic response1 papertemperature-controlled chambers, white fluorescent lamps...
experimental

Natural frost exposure experiment (Boraginaceae)

Opportunistic use of natural frost events to test differential frost sensitivity between style morphs. Flowers were exposed to freezing temperatures then assessed for reproductive success compared to ...

environmental stress1 paperflower marking materials, pollination tools
experimental

Nitrogen deposition simulation in ant colony enclosures (Formicidae)

Factorial experiment testing effects of low-level nitrogen enrichment on trophic cascades using enclosed ant colonies with controlled fertilizer applications. Enclosures contained single ant nests and...

nutrient manipulation1 papermale fern rhizomes, plastic barriers...
experimental

Paired emergent rock manipulation (Insecta)

Field manipulation creating pairs of embedded and unembedded emergent rocks of similar characteristics to test substrate selection by ovipositing aquatic insects.

habitat manipulation1 paperpaint pen, measuring tools
experimental

Paired plot habitat comparison for pollinator-plant interactions (Plantae)

Comparative field study using paired plots in different habitat types (understory vs open meadow) to measure environmental conditions, floral resources, and pollinator visitation during drought condit...

comparative field study1 paperdensitometer, handheld infrared thermometer...
experimental

Pairwise host choice trials for phoretic mites (Parasitidae)

Ten deuteronymph mites were placed in a cylindrical vial with two potential beetle hosts for 5 minutes to assess host selection preferences based on beetle characteristics.

behavioral assay1 papercylindrical plastic vial, carbon dioxide
experimental

Paver temperature manipulation and arthropod monitoring (Formicidae)

Use of painted concrete pavers with temperature sensors to create thermal gradients and monitor arthropod colonization responses. Combines controlled temperature manipulation with behavioral monitorin...

thermal manipulation1 paperconcrete pavers 10x10 inches, black paint...
experimental

Peripheral vision obstruction experiment (Sciuridae)

Controlled experiment using a feeding apparatus with removable clear or opaque panels to test the direct effects of peripheral visual obstruction on marmot vigilance and foraging behavior. Uses within...

behavioral manipulation1 paperurethane-coated plywood, clear polythylene sheets...
experimental

Plant leachate bioassay for allelopathy testing (Poaceae)

A controlled greenhouse experiment using plant leachates prepared by running deionized water through pots containing treatment species, then applying these leachates to test plants to evaluate allelop...

allelopathy1 paper5 L pots, deionized water...
experimental

Pollen movement characterization using analog particles (Plantae)

Use of pollen analog particles to characterize dispersal patterns and develop distance-weighted pollen availability indices based on Lomax distribution modeling

pollination ecology1 paperpollen analog materials
experimental

Predation selectivity enclosure experiments

Controlled predation experiments in field or laboratory enclosures with known numbers of alternative prey species to test hypotheses about selective predation and measure predation rates. Compares pre...

predation trials1 paperenclosures, mesh screens...
experimental

Pseudomonas bacterial inoculation of field plants (Drosophilidae)

Field plants were inoculated with different strains of Pseudomonas bacteria using blunt syringes to create infected and control treatments for studying plant-insect interactions.

pathogen manipulation1 paperblunt syringe, bacterial cultures...
experimental

Resource addition through irrigation and fertilization (Polemoniaceae)

Factorial resource treatments including water addition (400ml, 4x weekly) and water plus NPK fertilization (20-20-20 at 4ml/L weekly) delivered via drip irrigation to test resource limitation effects ...

nutrient manipulation1 paperdrip irrigation system, 20-20-20 NPK fertilizer
experimental

Response surface design (Chironomidae)

A substitutive and additive design varying relative densities of two organisms to determine dynamics between taxa. Uses four relative abundances at three biomass levels to test competition, facilitati...

interaction testing1 papermicrocosms
experimental

Seed surface sterilization (Fabaceae)

Common garden experiment manipulating soil microbial communities through sterilization vs. inoculation to test effects on seed germination success and timing under controlled environmental conditions.

plant-microbe interactions1 paperautoclave, Conviron MTR30 growth chamber...
experimental

Short-term herbivore impact assessment on marked plants (Caprifoliaceae)

Individual plants are marked and tracked over 1-2 growing seasons to quantify herbivore damage, plant growth parameters, and reproductive output through seed counting. Environmental variables affectin...

herbivory monitoring1 paperforestry flagging, aluminum metal tags...
experimental

Spatial array microcosm experiment

Laboratory experiment using interconnected bottle arrays to manipulate spatial heterogeneity in protist food webs and test effects on species coexistence.

community ecology1 paperbottles, Tygon tubing