Protocols

All (1474)Explore Protocol Graph

211 protocols

measurement

bird banding (Passerellidae)

Standard measurements of bird morphology including wing chord, tail length, tarsus length, and body condition assessment. Birds banded with color combinations and USGS bands for individual identificat...

morphological assessment3 papersthree-color darvic bands, USGS bands size 1B...
measurementstandardized

body condition index (Ambystomatidae)

Calculation of body condition metrics (mass/SVL³) and derived fitness proxies including condition-weighted reproductive opportunities for males and estimated egg production for females based on body s...

morphometric analysis3 papersmeasuring devices for SVL, scales for mass measurement...
measurement

Acrylic leaf imprint stomatal analysis

Acrylic imprints of leaf surfaces are made on glass slides and analyzed under compound microscope to count stomata and measure their diameters.

anatomical2 papersacrylic, glass slides...
measurementstandardized

Approximated Maximum Likelihood algorithm (Sciuridae)

Uses array of wireless acoustic sensors with correlation envelope sum (CES) method to precisely locate sources of marmot alarm calls in field settings. Employs cross-correlation analysis and multilate...

acoustic localization2 papersVoxNet wireless sensor nodes, microphones...
measurementstandardized

Atmospheric Radiation Measurement Program

Comprehensive ground-based cloud property retrieval using Ka-band radar for cloud boundaries, multifilter radiometry and sun photometry for optical thickness, and thermodynamic profiling for phase det...

ground-based remote sensing2 papersKa Band ARM Zenith Radars, MFRSR...
measurement

Cavity nest site characterization (Aves)

Comprehensive measurement of nest tree characteristics and landscape context including tree size, nest height, cavity orientation, and distances to key habitat features. Multi-scale habitat characteri...

habitat assessment2 paperscompass, measuring equipment for DBH...
measurement

Ceramic tile algal biomass estimation

Use of ceramic tiles as standardized substrates for measuring benthic algal biomass via chlorophyll-a extraction and fluorometry. Includes grazed vs ungrazed comparisons to assess herbivory effects.

primary production2 papersunglazed ceramic tiles, 90% buffered ethanol...
measurement

Densitometer canopy cover assessment (Brassicaceae)

Canopy cover measurement using densitometer to classify habitats as sun (5% shade), deep shade (95% shade), or ecotonal (5-95% shade) environments.

habitat characterization2 papersdensitometer
measurement

Digital caliper morphometry of hummingbirds (Trochilidae)

Standard morphological measurements of hummingbird bill dimensions, mandible, and wing chord using digital calipers with duplicate measurements by different observers.

morphological measurement2 papershand calipers with digital display
measurement

Ecosystem nutrient uptake measurement (Amphibia)

Nutrient addition experiments in benthic substrates and sedge biofilms to measure ecosystem demand through exponential decay models. Measures uptake capacity of different pond compartments.

biogeochemistry2 papersclear plastic cylinders, plastic bags...
measurement

FLIR thermal imaging of alpine patterned ground

Forward Looking Infrared thermal photography combined with machine learning data sculpture techniques to visualize temperature patterns in periglacial environments

remote sensing2 papersFLIR camera, machine learning software...
measurementstandardized

Falling-head slug test

Systematic characterization of alluvial sediment physical properties through grain size analysis and bulk density measurements to derive hydraulic conductivity, porosity, and van Genuchten parameters ...

soil physics2 paperssoil sampling tools, grain size analysis equipment
measurement

Fitness component quantification (Brassicaceae)

Comprehensive measurement of multiple fitness components including survival, reproductive success, fecundity, and growth rates to assess life history trade-offs under resource stress.

demographic assessment2 papersplant identification tags, counting equipment for fruit enumeration...
measurement

Grid-based topographic measurement

Systematic measurement of slope and aspect at grid cell centers using compass and clinometer with clipboard to minimize micro-scale surface variation effects.

topographic survey2 paperscompass, clinometer...
measurementstandardized

Heat pulse sap flow measurement (Plantae)

Continuous measurement of tree water transport using thermal dissipation sensors with temperature measurements at multiple depths in sapwood to calculate sap velocity via heat pulse methodology.

physiological monitoring2 paperssap velocity sensors manufactured by ICT International, drill guide...
measurement

Ion exchange resin strips

Mixed-bed ion-exchange resin bags deployed at 5 cm soil depth to assess NO3-N and NH4-N availability. Resins are extracted with KCl and analyzed using flow injection autoanalyzer.

biogeochemistry2 papersmixed-bed ion-exchange resin bags, nylon stockings (H-OH form, # R231-500; Fisher Scientific International Inc., Pittsburgh, PA, USA)...
measurementstandardized

Landsat NDVI drought sensitivity mapping

Processing of Landsat NDVI time series to quantify foresummer drought sensitivity as the slope of peak NDVI versus June Palmer Drought Severity Index. Represents plant productivity responses to early ...

remote sensing2 papersLandsat imagery, USGS data processing
measurement

Metabolic monitoring during marmot torpor entry (Sciuridae)

Simultaneous measurement of oxygen consumption, body temperature, and conductance in marmots entering torpor to determine mechanisms of metabolic depression. Q10 analysis used to distinguish active me...

physiological monitoring2 papersoxygen consumption measurement system, temperature monitoring system...
measurement

Microscopic dust particle quantification (Plantae)

Standardized protocol to transfer dust from plant surfaces to microscope slides and count particles in defined areas under magnification. Used to calibrate experimental dust treatments against natural...

microscopy2 papersmicroscope slides, clean wax paper...
measurementstandardized

NEON Airborne Observation Platform (Salicaceae)

Airborne hyperspectral imaging (380-2500 nm) and LiDAR data collection at 1 m resolution, followed by machine learning algorithms to produce aspen cover and cytotype distribution maps.

remote sensing2 papersNEON Airborne Observation Platform, hyperspectral sensors (380-2500 nm)...
measurementstandardized

Ovary response measurement for fertilization assessment

Post-pollination measurement of ovary size changes as a proxy for detecting fertilization events and ovule development. Uses standardized photography and image analysis to quantify ovary dimensions.

reproductive biology2 papersdissecting microscope, Leica camera...
measurement

Plant fitness monitoring in field experiment (Plantae)

Repeated measurements of plant morphological traits (tillers, leaves, height) and survival tracking to assess fitness responses to experimental treatments.

demographic monitoring2 papersmeasuring rulers accurate to 0.1 cm, field notebooks
measurement

Resazurin-based aerobic respiration assay

Measurement of oxygen consumption rates in pore water samples using resazurin as an indicator dye. Samples preserved at 4°C for 24 hours before spectrofluorometric analysis to determine aerobic respir...

biogeochemical2 papersHoriba Fluoromax 3 spectrofluorometer, resazurin
measurement

Riparian willow structural complexity assessment (Parulidae)

Combined vertical (Robel pole) and horizontal (line intercept) measurements to quantify willow habitat structural complexity including height diversity, average height, patchiness, frequency and cover...

vegetation structure2 papersmodified Robel pole, 3x200-cm PVC pipe marked at 0.5 m intervals...
measurement

Stratigraphic section measurement

Detailed measurement and quantification of sedimentary structure types and their relative abundances in stratigraphic sections, including calculation of stratification ratios.

sedimentology2 paperssteel tape, SED computer program
measurement

Stream Solute Workshop method

Tracer Additions for Spiraling Curve Characterization method involving simultaneous injection of water tracer and nutrients with downstream breakthrough curve monitoring to quantify reach-scale nutrie...

stream biogeochemistry2 papersRhodamine WT, NH4Cl...
measurement

Temperature data logging

Deployment of temperature loggers at multiple depths in aquatic habitats with half-hourly recordings over multi-week periods. Includes post-processing gap-filling using reference gauge data.

environmental monitoring2 paperstemperature loggers, mesh bags...
measurementstandardized

Tethered balloon vertical profiling

Tethered balloon system flights carrying aerosol instruments vertically through the atmospheric column to generate profiles of particle concentrations with altitude. Pseudo vertical columns are constr...

vertical sampling2 paperstethered balloon system, balloon-mounted POPS instruments...
measurement

Tourist traffic volume indexing (Sciuridae)

Weekly counts of visitors at a facility to create a traffic volume index as a proxy for vehicle traffic on nearby roads during peak visitation periods.

traffic monitoring2 papersRMBL Visitor Center visitor counting system
measurementstandardized

anogenital distance measurement (Sciuridae)

Measurement of anogenital distance using dial or digital callipers to 1mm accuracy as a proxy for prenatal testosterone exposure and masculinization. Distance measured from centre of genital opening t...

morphometric2 papersdial callipers, digital callipers
measurementstandardized

eddy covariance

Standardized eddy covariance measurements of carbon dioxide, water vapor, and energy fluxes between ecosystems and atmosphere. Continuous automated measurements providing ground truth data for model t...

ecosystem fluxes2 papersFLUXNET eddy covariance towers, meteorological sensors...
measurement

porometry

Direct measurement of leaf stomatal conductance using porometer to assess plant water stress and physiological responses to watering treatments. Measured during flowering and early fruiting phases.

plant physiology2 papersMeter SC-1 porometer
measurement

reflectance-based chlorophyll index (Polemoniaceae)

Non-destructive estimation of leaf chlorophyll concentration using reflectance spectroscopy and vegetation indices.

physiological2 papersreflectance spectrometer
measurement

15N tracer uptake (Asteraceae)

Stable isotope tracer experiment using 15N-labeled fertilizer to quantify nitrogen uptake rates and allocation in plants growing under different soil treatments.

physiological1 paper100-mm 11-gauge biopsy needles, Cambridge Stable Isotopes ¹⁵NH₄-¹⁵NO₃...
measurement

Aboveground net primary productivity measurement (Pinaceae)

Calculation of tree biomass increment through repeat diameter measurements combined with allometric equations, plus litterfall collection to estimate total aboveground productivity.

productivity assessment1 papersteel diameter tape, mesh-lined litter traps...
measurement

Acoustic Doppler Velocimetry

Stream discharge measurement using acoustic doppler velocimetry with systematic cross-sectional velocity measurements integrated to calculate total flow.

hydrological monitoring1 paperSonTek Flowtracker acoustic doppler velocimeter, tag line...
measurement

Anderson and Embick flower color scale (Plantae)

Standardized visual scoring system for flower color in Boechera stricta using 6-point scale from 0 (white) to 5 (purple) with intermediate pink/purple categories.

phenotypic scoring1 paperAnderson and Embick flower color scale
measurement

Anisotropy of Magnetic Susceptibility (AMS)

Oriented rock cubes are measured for directional magnetic susceptibility to determine fabric orientation and strength. Principal axes and confidence ellipses calculated using Jelinek statistics.

magnetic fabric analysis1 paperrock hammer, GPS units...
measurement

Aquatic habitat characterization (Malacostraca)

Visual and quantitative assessment of pond habitat characteristics including depth, vegetation, sediment, and detritus to characterize pond environmental conditions.

habitat assessment1 paperdepth measurement tool (not specified)
measurement

Automated climate monitoring (Caprifoliaceae)

Time-lapse cameras and data loggers used to continuously monitor snow melt timing and air temperature to calculate growing degree days and assess treatment effectiveness.

environmental monitoring1 papermounted time-lapse cameras, data loggers...
measurement

Avalanche debris transect assessment (Cricetidae)

Linear transects used to quantify debris coverage as confirmation of avalanche disturbance impact. Percent debris calculated along fixed-length transects to characterize site conditions.

disturbance quantification1 papermeasuring equipment for 100m transects
measurement

Belowground biomass allometry for alpine plants (Asteraceae)

Excavation and measurement of root systems to develop allometric relationships between aboveground and belowground plant dimensions. Used to estimate below-ground spatial extent from above-ground meas...

plant morphometry1 paperexcavation tools
measurement

Biovolume standardization

Calculation of protist biovolume using length and width measurements to standardize initial biomass across species.

biomass estimation1 paper
measurement

Brad Taylor Didymo index (Animalia)

Visual estimation of Didymosphenia geminata biomass using percent cover and height measurements at multiple spatial scales (microhabitat via viewing box, macrohabitat via transect surveys).

algal biomass assessment1 paperAqua Googie™ glass-bottomed viewing box, measuring equipment for transects
measurement

Butterfly food intake measurement via precision weighing (Nymphalidae)

Direct measurement of sugar-water consumption in butterflies by weighing individuals before and after feeding events using high-precision scales. Butterflies fed ad libitum on droplets of 1:3 sugar-wa...

feeding behavior1 paperhigh-precision 0.1 mg scale (Sartorius AG, Göttingen, Germany), forceps...
measurement

Clark and Clark crown illumination index (Plantae)

Visual assessment of light availability to individual tree crowns using standardized categories from no direct light to completely exposed conditions.

forest structure1 paperstandardized observation protocol
measurement

Community ecological state variable measurement

Systematic measurement of individual sizes and abundances within defined community areas to calculate species richness, total abundance, biomass, and metabolic rate. Individual measurements are standa...

community ecology1 papermeasurement tools for stem diameter, scales or other mass measurement tools...
measurement

Daubenmire frame cover estimation (Ambystomatidae)

Standardized ranking of vegetation cover in quadrats using the established Daubenmire cover class system.

vegetation quantification1 paper
measurement

Digital photography egg counting (Nymphalidae)

Use of digital photography combined with computer software to accurately count eggs and first instar larvae in butterfly egg clusters. Includes estimation methods for eggs in multiple layers.

demographic monitoring1 paperdigital camera, computer program 'Paint'
measurement

Discrete size class nymph measurement (Membracidae)

Visual size estimation of treehopper nymphs using reference cards with actual nymphs of known sizes glued to cards, calibrated weekly with caliper measurements of sample nymphs.

morphometric1 paperindex cards with reference nymph sizes, 0.02 mm caliper