Protocols

All (1474)Explore Protocol Graph

1,474 protocols

analytical

Mating system modeling (Pinaceae)

Statistical models used to infer mating parameters and pollen dispersal characteristics.

0 papers
computational

Meteorological Data Integration

Script integrates PRISM gridded data, NCEP-NCAR Reanalysis data, and analytical calculations to create consistent meteorological forcing dataset.

0 papers
analytical

Methylene blue spectrophotometry

Dissolved sulfide concentration determined by reacting H2S with N,N-dimethyl-p-phenylene diamine under acidic conditions to form methylene blue.

0 papers
laboratory

Microwave digestion

Laboratory method for sample preparation and analysis.

0 papers
observational

Mineral resource assessment

Field sampling and geological survey to assess mineral resource potential in wilderness study areas.

0 papers
sampling

Mineral resource survey

Fire assay for gold and silver, and spectrographic analysis for 40 elements including copper, lead, molybdenum, tungsten, and uranium.

0 papers
analytical

Mixed model analysis

Statistical analysis using mixed models to test for differences in network indices across seasonal periods.

0 papers
computational

Model output post-processing

Processing and subsetting of raw WRF output variables to watershed region using xarray software.

0 papers
analytical

Model selection for transmission pathways

Model selection analyses to evaluate possible transmission pathways including indirect vector transmission and direct predation transmission.

0 papers
measurement

Modular particulate matter sensing

Uses Modulair-PM (QuantAQ) sensors with nephelometer and optical particle counter (OPC) to measure mass concentrations of PM1, PM2.5, and PM10, along with particle size distributions from 0.35-40 micr...

0 papers
analytical

Molecular analysis (Bathynellidae)

Specimens were analyzed using 18S and COI gene sequencing for molecular characterization.

0 papers
analytical

Molecular clock analysis (Pygopodidae)

Method used to root phylogenetic trees when outgroup taxa create long-branch attraction problems.

0 papers
analytical

Multi-laboratory geochemical analysis

Analysis of samples for mineral composition, element composition, and nitrogen chemistry at multiple laboratories.

0 papers
measurement

Multichannel Analysis of Surface Waves

Active 1D MASW test data collected to estimate 1D seismic shear-wave velocity structure at sites.

0 papers
measurement

Multifilter Rotating Shadowband Radiometer measurements

Upward-facing MFRSR measures downwelling irradiance through sequential observations reconstructed from irradiances during various shadowband positions.

0 papers
analytical

Multiple Linear Regression Modeling

Statistical modeling approach to estimate salinity and selenium loads using geospatial and water-quality data as predictors.

0 papers
measurement

Multispectral imaging

Collection of multispectral data in tif format for analysis of beaver-impacted stream corridors.

0 papers
analytical

ND2 gene sequencing

Sequencing of 648 or 889 base pair region of the ND2 gene for at least 10 individuals from 53 contemporary populations to determine haplotype variation.

0 papers
analytical

ND2 gene sequencing (Animalia)

Sequencing of mitochondrial ND2 gene regions for phylogenetic analysis of cutthroat trout lineages.

0 papers
analytical

NDVI calculation from NAIP imagery

Calculation of Normalized Differential Vegetation Index from 4-band aerial imagery using (NIR-Red)/(NIR+Red) formula.

0 papers
observational

NEON AOP Airborne Remote Sensing

National Ecological Observatory Network Airborne Observation Platform flights acquiring LiDAR, imaging spectroscopy, and high-resolution camera imagery.

0 papers
sampling

NEON AOP digital elevation modeling

Creation of digital surface model from 2018 NEON Airborne Observation Platform dataset representing height above sea level for objects attached to the ground.

0 papers
analytical

NMDS analysis preparation

Sample day by species matrix preparation for Non-metric Multidimensional Scaling analysis of vouchered bee data.

0 papers
analytical

NMR processing

Nuclear magnetic resonance data processed to determine T2 relaxation time distribution for water content and geometric mean calculations.

0 papers
analytical

NOAA degree-day data compilation (Animalia)

Compilation and processing of NOAA weather data for degree-day calculations from 1950-2015. Temperature data aggregation for thermal ecology analysis.

0 papers
computational

Network analysis with igraph

R interface for graph theory and network analysis using the igraph library.

0 papers
experimental

No choice experiment (Plantae)

Controlled experiment where subjects are not given choices, used to test responses under specific conditions without alternatives.

0 papers
analytical

Object-oriented classification

Used eCognition software with RGB bands and normalized difference water index (NDWI) to classify channel water surface from imagery.

0 papers
analytical

Oil and gas resource assessment

USGS Central Region Energy Team method for assessing oil and gas resources by defining provinces, Total Petroleum Systems, and Assessment Units based on geological characteristics.

0 papers
sampling

Opti O2 probe deployment

Deployment of dissolved oxygen probes in water column and riverbed at 10, 20, and 35 cm depths with autonomous telemetry.

0 papers
analytical

Orthorectification

Geometric processing method required to convert raw-space data to map-space surface reflectance.

0 papers
analytical

Overlap estimation

Overlap estimates used to evaluate temporal changes within and between elevations.

0 papers
analytical

PERMANOVA testing

Statistical testing of contribution of season, depth and location on viral community structure.

0 papers
analytical

POPS Data Post-Correction

Data cleaning and post-correction process to remove bad values from raw POPS measurements, providing ready-to-use datasets.

0 papers
analytical

Parametric bootstrapping (Pygopodidae)

Statistical method used to determine the most plausible branching schemes linking taxonomic groups.

0 papers
sampling

Particulate matter sample collection

Collection of airborne particulates from snow and dry deposition for lead isotopic analysis.

0 papers
analytical

Paternity analysis (Pinaceae)

Genetic analysis using nuclear microsatellite markers to determine paternal parentage and pollen dispersal patterns.

0 papers
analytical

Petrophysical relationship analysis

Derivation of hydraulic permeability and porosity from ERT data through petrophysical relationships for model parameterization.

0 papers
observational

Phenological event recording

Collection of first sighting and median activity data across diverse taxonomic groups over 45 years (1975-2020).

0 papers
analytical

Phylogenetic analysis (Plantae)

Analysis of evolutionary relationships and taxonomic classification to understand angiosperm radiation into freezing environments.

0 papers
analytical

Phylogenetic analysis (Pygopodidae)

Analysis of mitochondrial DNA, nuclear DNA, and morphological data using parsimony, maximum likelihood, and Bayesian methods.

0 papers
analytical

Phylogenetic comparative approach (Asteraceae)

Used to examine evolution of leaf economics spectrum across 28 species of Helianthus across environmental gradients.

0 papers
analytical

Phylogenetic generalized least squares regression (Proteaceae)

Used to investigate evolutionary pathways of traits and climatic niches and their effect on diversification rates.

0 papers
analytical

Phylogenetic mixture model analysis (Tupaiidae)

Analysis of concatenated genetic data using phylogenetic mixture models to investigate evolutionary relationships.

0 papers
computational

Phylogenetic tree construction (Proteaceae)

Built a time-calibrated phylogenetic tree for 337 Proteaceae species using five chloroplast markers.

0 papers
analytical

Phytoplankton identification and counting

Identification methods for marine phytoplankton including counts and abundance ratios of over 50 genera.

0 papers
sampling

Plot sampling for aeolian processes

Field sampling using plot-based methods to assess time series data of aeolian sediment collections across varying climates, vegetation cover, and land uses. Includes field monitoring stations for cont...

0 papers
analytical

Pollen analysis

Analysis of pollen from archaeological site sediments to reconstruct past vegetation.

0 papers
analytical

Polymer composition analysis (Plantae)

Analysis of plastic samples to determine polymer composition and material properties.

0 papers
analytical

Potentiometric surface contouring

Generation of contours showing the generalized altitude of the potentiometric surface for the shallow groundwater system. Contours were created from values in the raster dataset potalt.

0 papers