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Protocols

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26 protocols

experimentalstandardized

Factorial environmental stress experiment (Limnephilidae)

2x2 factorial design manipulating temperature and conductivity to test environmental drying cues on caddisfly development and survival. Uses shade manipulation and salt additions to simulate pond dryi...

environmental physiology29 papersshade cloth, NaCl solution...
samplingstandardized

mark-recapture (Ambystomatidae)

Annual capture-recapture surveys over 24 years to track individual survival, growth, reproduction and developmental pathways in a polyphenic salamander population. Combines individual marking with det...

demographic monitoring27 paperslong handled net, Weatherport...
samplingstandardized

slit emergence traps

Systematic collection of water samples from ponds across a hydroperiod gradient for analysis of nitrogen and phosphorus compounds. Samples collected at multiple time points to capture temporal variati...

aquatic biogeochemistry14 paperssample containers, refrigeration...
analyticalstandardized

Fluorometric ammonium method

Fluorometric analysis of ammonia in water samples using working reagent that produces fluorescent compound when reacting with ammonia. Uses quadruplicate sampling and background correction.

water chemistry12 paperssample containers, cooler...
experimentalstandardized

Leaf pack decomposition assay

Controlled microcosm experiments measuring invertebrate-mediated breakdown of sedge detritus by quantifying mass loss of coarse and fine particulate organic matter over time. Uses standardized biomass...

decomposition measurement11 papersplastic bins, 1 mm mesh...
measurementstandardized

instar staging

Standardized measurements of wing length and dried body mass components under stereomicroscope to quantify adult fitness proxies and assess elevation effects on body size.

morphological11 papersstereomicroscope (6.5X), drying oven...
observationalstandardized

focal animal sampling (Limnephilidae)

Individual caddisflies are observed for fixed time periods to record movement patterns, social interactions, and aggressive behaviors. Follows established protocols for recording specific behaviors li...

behavioral monitoring9 papersstopwatch for timing
experimentalstandardized

Tiger salamander feeding preference mesocosm trials (Ambystomatidae)

Controlled feeding trials in plastic mesocosms where starved salamanders are presented with multiple prey types and their consumption and foraging behavior is observed and quantified over a fixed time...

feeding behavior8 papers52 cm × 36.5 cm plastic boxes, observation recording materials...
samplingstandardized

gastric-lavage (Ambystomatidae)

Modified gastric-lavage technique to obtain stomach contents for prey identification, enumeration, and biomass/caloric calculations using published conversion factors.

dietary analysis6 papersgastric-lavage equipment, dissecting microscope
experimentalstandardized

CNS elemental analysis (Limnephilidae)

Short-term incubation of caddisfly larvae in filtered pond water to measure nitrogen and phosphorus excretion rates under ambient conditions. Five larvae per species were incubated for one hour in sha...

metabolic rate assessment5 papersZiploc bags, syringe...
experimentalstandardized

Macroinvertebrate nutrient excretion incubation

Organisms are incubated in filtered pond water for one hour to measure nitrogen and phosphorus excretion rates through water chemistry analysis before and after incubation.

biogeochemical measurement5 papersbags, water filters...
experimentalstandardized

Multiple-choice feeding preference assay (Limnephilidae)

Larvae offered multiple food choices in aquatic containers with instantaneous behavioral sampling over extended time periods to quantify feeding preferences.

behavioral ecology5 papersplastic containers, paper clips...
samplingstandardized

d-frame net sampling

Standardized sampling of large and small benthic invertebrates using D-net sweeps and benthic cores, with zooplankton sampling using mesh nets. Animals identified to species or family level for commun...

aquatic invertebrate survey5 papers0.33 m² benthic D-net, 0.02 m² benthic core...
measurementstandardized

Multi-parameter water quality monitoring (Amphibia)

In-situ measurement of temperature, pH, dissolved oxygen, and barometric pressure at multiple points around each pond during peak photosynthetic activity. Provides standardized water chemistry profile...

environmental monitoring4 paperspH probe, dissolved oxygen probe...
measurement

Salamander biofluorescence photography under blue excitation (Amphibia)

Standardized photography protocol using blue light excitation to capture biofluorescence in salamanders under controlled conditions with specific camera settings and positioning.

fluorescence imaging4 papers500mm long-pass lens from Nightsea, Sony a6400 mirrorless camera...
analyticalstandardized

DAYMET climate data (Ambystomatidae)

Collection and integration of climate variables from multiple databases including temperature, solar radiation, snow metrics, and topographic factors to characterize environmental conditions at study ...

environmental monitoring3 papersDAYMET database, Western United States Daily Snow Reanalysis database
experimentalstandardized

PIT tagging technique for Ambystomatid salamanders (Amphibia)

Controlled laboratory experiment comparing survival, growth, and tag retention between PIT-tagged and control salamanders over 90 days to validate tag safety for small amphibians.

safety validation3 papersplastic housing boxes, EcoEarth substrate...
measurementstandardized

body condition index (Ambystomatidae)

Calculation of body condition metrics (mass/SVL³) and derived fitness proxies including condition-weighted reproductive opportunities for males and estimated egg production for females based on body s...

morphometric analysis3 papersmeasuring devices for SVL, scales for mass measurement...
computationalstandardized

Ambystoma population dynamics differential equation modeling

Development and analysis of a seven-dimensional nonlinear differential equation system modeling tiger salamander population dynamics across life stages and morphological forms. The model incorporates ...

mathematical modeling2 papersMatlab software
measurement

Ceramic tile algal biomass estimation

Use of ceramic tiles as standardized substrates for measuring benthic algal biomass via chlorophyll-a extraction and fluorometry. Includes grazed vs ungrazed comparisons to assess herbivory effects.

primary production2 papersunglazed ceramic tiles, 90% buffered ethanol...
experimentalstandardized

De-mentation behavioral interference assay

Laboratory aquarium experiment using surgically modified (de-mented) dragonfly larvae to separate behavioral interference effects from direct predation effects on prey consumption.

behavioral ecology2 papers38-L aquaria, dissecting scissors...
measurement

Ecosystem nutrient uptake measurement (Amphibia)

Nutrient addition experiments in benthic substrates and sedge biofilms to measure ecosystem demand through exponential decay models. Measures uptake capacity of different pond compartments.

biogeochemistry2 papersclear plastic cylinders, plastic bags...
measurement

Stream Solute Workshop method

Tracer Additions for Spiraling Curve Characterization method involving simultaneous injection of water tracer and nutrients with downstream breakthrough curve monitoring to quantify reach-scale nutrie...

stream biogeochemistry2 papersRhodamine WT, NH4Cl...
experimental

Thermal gradient runway temperature selection assay

Custom apparatus measuring salamander temperature selection behavior using water-cooled and heated runway with position and body temperature tracking over 3.5 hour trials.

behavioral thermoregulation2 papers3 meter long gutter, wort chiller...
experimental

Three-chamber salamander choice experiment (Ambystomatidae)

Controlled behavioral experiments using salamanders in tanks with traps at either end to test preferences for different light stimuli and biofluorescent vs. non-biofluorescent mates. Salamanders place...

behavioral choice2 paperslong shallow tanks (40 x 20 x 6.12 inches), traps...
observational

pond hydroperiod classification

Classification of ponds into permanent, semi-permanent, and temporary categories based on historical drying patterns and hydroperiod duration from long-term data records.

habitat classification2 papersGPS units, GIS software...