Protocols
26 protocols
Factorial environmental stress experiment (Limnephilidae)
2x2 factorial design manipulating temperature and conductivity to test environmental drying cues on caddisfly development and survival. Uses shade manipulation and salt additions to simulate pond dryi...
mark-recapture (Ambystomatidae)
Annual capture-recapture surveys over 24 years to track individual survival, growth, reproduction and developmental pathways in a polyphenic salamander population. Combines individual marking with det...
slit emergence traps
Systematic collection of water samples from ponds across a hydroperiod gradient for analysis of nitrogen and phosphorus compounds. Samples collected at multiple time points to capture temporal variati...
Fluorometric ammonium method
Fluorometric analysis of ammonia in water samples using working reagent that produces fluorescent compound when reacting with ammonia. Uses quadruplicate sampling and background correction.
Leaf pack decomposition assay
Controlled microcosm experiments measuring invertebrate-mediated breakdown of sedge detritus by quantifying mass loss of coarse and fine particulate organic matter over time. Uses standardized biomass...
instar staging
Standardized measurements of wing length and dried body mass components under stereomicroscope to quantify adult fitness proxies and assess elevation effects on body size.
focal animal sampling (Limnephilidae)
Individual caddisflies are observed for fixed time periods to record movement patterns, social interactions, and aggressive behaviors. Follows established protocols for recording specific behaviors li...
Tiger salamander feeding preference mesocosm trials (Ambystomatidae)
Controlled feeding trials in plastic mesocosms where starved salamanders are presented with multiple prey types and their consumption and foraging behavior is observed and quantified over a fixed time...
gastric-lavage (Ambystomatidae)
Modified gastric-lavage technique to obtain stomach contents for prey identification, enumeration, and biomass/caloric calculations using published conversion factors.
CNS elemental analysis (Limnephilidae)
Short-term incubation of caddisfly larvae in filtered pond water to measure nitrogen and phosphorus excretion rates under ambient conditions. Five larvae per species were incubated for one hour in sha...
Macroinvertebrate nutrient excretion incubation
Organisms are incubated in filtered pond water for one hour to measure nitrogen and phosphorus excretion rates through water chemistry analysis before and after incubation.
Multiple-choice feeding preference assay (Limnephilidae)
Larvae offered multiple food choices in aquatic containers with instantaneous behavioral sampling over extended time periods to quantify feeding preferences.
d-frame net sampling
Standardized sampling of large and small benthic invertebrates using D-net sweeps and benthic cores, with zooplankton sampling using mesh nets. Animals identified to species or family level for commun...
Multi-parameter water quality monitoring (Amphibia)
In-situ measurement of temperature, pH, dissolved oxygen, and barometric pressure at multiple points around each pond during peak photosynthetic activity. Provides standardized water chemistry profile...
Salamander biofluorescence photography under blue excitation (Amphibia)
Standardized photography protocol using blue light excitation to capture biofluorescence in salamanders under controlled conditions with specific camera settings and positioning.
DAYMET climate data (Ambystomatidae)
Collection and integration of climate variables from multiple databases including temperature, solar radiation, snow metrics, and topographic factors to characterize environmental conditions at study ...
PIT tagging technique for Ambystomatid salamanders (Amphibia)
Controlled laboratory experiment comparing survival, growth, and tag retention between PIT-tagged and control salamanders over 90 days to validate tag safety for small amphibians.
body condition index (Ambystomatidae)
Calculation of body condition metrics (mass/SVL³) and derived fitness proxies including condition-weighted reproductive opportunities for males and estimated egg production for females based on body s...
Ambystoma population dynamics differential equation modeling
Development and analysis of a seven-dimensional nonlinear differential equation system modeling tiger salamander population dynamics across life stages and morphological forms. The model incorporates ...
Ceramic tile algal biomass estimation
Use of ceramic tiles as standardized substrates for measuring benthic algal biomass via chlorophyll-a extraction and fluorometry. Includes grazed vs ungrazed comparisons to assess herbivory effects.
De-mentation behavioral interference assay
Laboratory aquarium experiment using surgically modified (de-mented) dragonfly larvae to separate behavioral interference effects from direct predation effects on prey consumption.
Ecosystem nutrient uptake measurement (Amphibia)
Nutrient addition experiments in benthic substrates and sedge biofilms to measure ecosystem demand through exponential decay models. Measures uptake capacity of different pond compartments.
Stream Solute Workshop method
Tracer Additions for Spiraling Curve Characterization method involving simultaneous injection of water tracer and nutrients with downstream breakthrough curve monitoring to quantify reach-scale nutrie...
Thermal gradient runway temperature selection assay
Custom apparatus measuring salamander temperature selection behavior using water-cooled and heated runway with position and body temperature tracking over 3.5 hour trials.
Three-chamber salamander choice experiment (Ambystomatidae)
Controlled behavioral experiments using salamanders in tanks with traps at either end to test preferences for different light stimuli and biofluorescent vs. non-biofluorescent mates. Salamanders place...
pond hydroperiod classification
Classification of ponds into permanent, semi-permanent, and temporary categories based on historical drying patterns and hydroperiod duration from long-term data records.
