Protocols

All (1474)Explore Protocol Graph

211 protocols

measurement

Drone-based habitat quality assessment for ground squirrel home ranges (Sciuridae)

Uses drone-mounted multispectral and thermal sensors to collect fine-scale habitat data within individual home ranges. Combines thermal imagery, vegetation mapping, and digital elevation models to qua...

remote sensing1 paperMicasense Altum sensors, DJI m300 drone...
measurement

Drosophila ovarian diapause assessment (Drosophilidae)

Microscopic examination of female Drosophila ovaries to determine reproductive state by assessing ovary size, transparency, and egg development stage to classify females as diapausing or reproductivel...

reproductive status1 paperlight microscope, dissection tools
measurement

Dual-method ectoparasite load assessment (Passerellidae)

Quantification of ectoparasite loads using visual inspection (2001) and pyrethrin dust-ruffling technique (2013). The dust-ruffling method focuses on macro-ectoparasites while visual inspection counts...

parasitological1 paperEvergreen® Pyrethrin dust, small paint brush...
measurement

Dual-polarization X-band radar precipitation monitoring

High-resolution scanning X-band radar system providing detailed precipitation measurements with dual-polarization capability. Performs volume scans and targeted range-height indicator scans for proces...

remote sensing1 paperColorado State University X-band scanning dual-polarization Doppler radar
measurement

Field water chemistry measurement (Bacillariophyceae)

Direct field measurement of pH and specific conductance in aquatic habitats using portable electronic instruments.

chemical analysis1 paperHanna Instruments waterproof meter, model 98129
measurement

Flight initiation distance protocol (Megapodiidae)

Standardized approach to measure the distance at which birds flee when approached by humans at a steady pace. Involves recording starting distance, approaching at 0.5 m/s, and measuring the distance w...

behavioral1 papermeasuring devices for distance
measurement

Frequency of dividing cells analysis (Gomphonemataceae)

Microscopic analysis of D. geminata samples to quantify the percentage of cells undergoing division as an indicator of phosphorus-limited growth rates.

cellular1 papermicroscopy equipment for cell division analysis
measurement

Frost damage assessment in alpine plants (Tephritidae)

Systematic counting and proportional assessment of frost-damaged buds relative to total reproductive structures across multiple plant species in montane meadows.

damage assessment1 papercounting tools
measurement

GIS vegetation cover quantification (Passeridae)

Digital mapping approach using GIS software to quantify percent willow cover within standardized buffer zones around survey points. Polygons of non-willow cover digitized to calculate proportional cov...

remote sensing1 paperGIS, ArcMap software
measurement

GNSS battlefield archaeology mapping

Systematic mapping of WWII defensive positions using Global Navigation Satellite System technology to create detailed plans of military features including bunkers, trenches, and weapon emplacements.

archaeological documentation1 paperGNSS technology
measurement

GPS plot location mapping (Apidae)

Recording precise locations of study plots and nest locations using GPS equipment for spatial analysis and reference.

spatial positioning1 paperGeoXT Terrasync
measurement

Gravimetric water content determination

Fresh plant tissue is collected during peak hydration, weighed fresh, dried at controlled temperature, then reweighed to calculate water content as the difference between wet and dry weights.

physiological1 paperscale, drying oven...
measurement

Hierarchical branch classification and measurement (Plantae)

A systematic approach to classifying willow branches by hierarchical position (primary, secondary, tertiary) and measuring diameters at specific locations relative to sap well positions, with size thr...

morphometric1 paperblue tree crayon, calipers
measurement

High Spectral Resolution Lidar

High spectral resolution lidar measurement of aerosol backscatter profiles to detect aerosol layer boundaries and depth. Uses Haar Wavelet transform gradient detection to identify significant changes ...

atmospheric profiling1 paperHigh Spectral Resolution Lidar (HSRL)
measurement

High-frequency acoustic recording of bird sonations (Trochilidae)

High sampling rate audio recording and spectrographic analysis of mechanical sounds produced by birds during flight, including wing and tail-generated sonations.

acoustic recording1 papermicrophones with 192 kHz sampling capability, acoustic analysis software...
measurement

Individual marking for identification (Silphidae)

Pin hole marking system in beetle wing cases using numbered pattern in quadrants to track individuals across experimental treatments.

individual identification1 paperpins for marking
measurement

Longitudinal pustule area measurement

Repeated photographic measurement of individual fungal pustules over time to quantify replication rates and disease progression. Uses standardized macro photography with consistent framing and lightin...

pathogen quantification1 paperCanon EOS Rebel T7i DSLR camera, Canon EF-S 35mm f/2.8 Macro IS STM lens...
measurement

Magnetic hysteresis measurement

Rock fragments measured for magnetic hysteresis properties and isothermal remanent magnetization to identify magnetic mineral carriers and domain states.

rock magnetism1 paperMicroMag 3900-04 vibrating sample magnetometer
measurement

Microclimate thermocouple monitoring (Boraginaceae)

Fine-scale temperature measurement using thermocouples positioned at stigma level within flowers to test whether different style morphs experience different thermal environments. Paired design compari...

environmental monitoring1 paperOM-CP-QuadTemp (Omega Engineering Inc., Stamford, CT, USA) thermocouples, data-loggers
measurement

Microhabitat temperature and moisture monitoring (Silphidae)

Continuous monitoring of temperature at surface and burial depth using data loggers, combined with regular soil moisture measurements to characterize microhabitat conditions.

environmental monitoring1 paperHOBO Temperature Data Loggers, Lincoln Irrigation Soil Moisture Meter...
measurement

Morphometric measurement of sparrows (Passeridae)

Standardized measurements of wing chord, tail, tarsus, culmen, crown width, and crown stripe width were taken on captured birds using rulers and calipers to assess sexual dimorphism.

morphological1 paperwing rule, calipers...
measurement

Multi-factor environmental characterization (Salicaceae)

Comprehensive site characterization including canopy light availability via hemispherical photography, disturbance assessment via cow presence indicators, regolith classification, and physiographic va...

environmental monitoring1 paperCanon 6D camera, 17-40mm f/4L lens...
measurement

Multi-method bedrock geophysical characterization

Integrated approach combining borehole drilling with comprehensive geophysical logging including NMR, electrical resistivity, temperature, and electromagnetic measurements to characterize subsurface b...

geophysical1 paperrotary drilling system, Vista Clara Javelin system...
measurement

Multi-radar beam alignment and comparability assessment

Protocol for evaluating antenna pointing accuracy and measurement comparability between multiple Doppler radar systems using solar alignment, constant elevation scans, and range height indicator measu...

radar intercomparison1 paperLIMRAD94, KAZR...
measurement

Multiplicative seed production analysis (Polemoniaceae)

Decomposition of total seed production into four multiplicative components: flower number, fruit set, seed set, and seed escape from predation. Allows identification of which reproductive stages are m...

reproductive output1 papercollection containers, seed counting materials
measurement

NEON Airborne Observation Platform

High-resolution airborne hyperspectral and lidar data collection and analysis to classify land cover types and derive vegetation parameters for hydrologic modeling.

remote sensing1 paperNEON hyperspectral spectrometer, NEON lidar...
measurement

Ovipositor bristle morphometry in Drosophilidae

Standardized counting and measurement of ventral ovipositor bristles using microscopy and digital imaging. Includes mounting specimens, photographing at standardized magnification, and counting specif...

morphological1 paperPermount mounting medium, EOS Rebel T3i camera...
measurement

Parasite load assessment and host processing (Insecta)

Systematic examination of host insects for parasites, counting and removal of parasites, followed by drying and weighing of both hosts and parasites for biomass determination.

parasitological1 paperscint vials, aluminum tins...
measurement

Pollen limitation assessment (Caprifoliaceae)

Assessment of female reproductive success in relation to pollen availability indices to understand how sex ratio changes affect population-level reproduction.

reproductive ecology1 paperpollen availability assessment tools
measurement

Portable Optical Particle Spectrometer

Portable Optical Particle Spectrometer (POPS) measurements of light scattering by particles passing through a laser beam to determine particle size distributions from 140 nm to 3.4 μm diameter. Instru...

aerosol sizing1 paperPOPS instruments, 495 nm polystyrene latex beads
measurement

Protractor-based floral orientation measurement (Boraginaceae)

A standardized method for measuring floral orientation using a protractor with suspended weight to determine the angle of flowers relative to vertical axis.

morphometric1 paperprotractor, suspended weight
measurement

RAINFOR protocol (Salicaceae)

Standardized protocol for assessing tree health status using categories of healthy, damaged, and dead based on crown condition, structural integrity, and cambium viability via scratch test.

forest monitoring1 paperscratch test tools
measurement

RFID tracking of bumble bee foraging behavior

Custom-built RFID system using paired antenna cards and microSD data logging to continuously track individual bee movements in and out of nest boxes. System records timestamps for each entrance and ex...

behavioral tracking1 papercustom PCB, Adafruit PN532 antenna cards...
measurement

Rabbitbrush reproduction and growth measurement (Formicidae)

Standardized measurement of rabbitbrush plant fitness through seed production per initial flower bud and growth via allometric modeling. Includes flower bud counts, seed bagging and harvest, and nonde...

plant performance1 papermesh bags, weighing equipment...
measurement

Road traffic noise measurement (Plantae)

Paired decibel measurements near and far from road using smartphone applications during vehicle passage events. Traffic volume also quantified by timing vehicle passage through marked road sections.

acoustic ecology1 papertwo iPhones with My Decibel Meter app, flags
measurement

Robel pole method (Passeridae)

Used 120-cm modified-Robel pole from 4-meter distance at 1-meter height to measure vegetation density around nests at four cardinal directions. Recorded lowest height at which nest area was visible.

vegetation structure1 paper120-cm modified-Robel pole
measurement

Snow depth monitoring with PVC stakes

Installation of marked PVC pipe stakes to visually monitor snow depth changes and provide reference points for fabric anchoring during snowmelt manipulation experiments.

snow measurement1 paperFour PVC pipes 2.5 cm x 3 m, Multi-Colored Duct Tape...
measurement

Snowpack-based drought classification

Classification of drought years based on winter snowpack totals measured from November to April, with low snow years indicating subsequent summer drought conditions. Uses established relationship betw...

climate monitoring1 papersnow measurement instruments
measurement

Standing crop index estimation for D. geminata (unknown)

Visual estimation of D. geminata biomass using percent cover and stalk height measurements through glass-bottomed viewing box. Standing crop index calculated as cover × height and used as biomass prox...

biomass estimation1 paperaquagogic™ glass-bottomed viewing box, meter tape
measurement

Synchrotron X-ray leaf venation imaging (Plantae)

High-resolution X-ray imaging of leaf venation networks using synchrotron light sources with both absorption and phase contrast approaches. Samples are mounted on translation stages and imaged with mo...

structural imaging1 paperaluminum platform, modeling clay...
measurement

THETA plant metabolic rate measurement (Plantae)

Field measurement technique for determining plant metabolic rates across species in natural communities. Used to generate empirical data for comparison with theoretical MaxEnt predictions.

physiological1 paperTHETA measurement system
measurement

TIMSI-based URE assessment

A standardized survey protocol measuring scientific integration constructs including self-efficacy, identity, values alignment, and career intentions before and after URE participation. Uses establish...

psychometric assessment1 paperQualtrics survey service
measurement

TROPoe

Retrieval of vertical temperature and water vapor profiles using infrared spectroscopy with optimal estimation physical retrieval method. Provides high temporal resolution (5-minute) profiles with det...

atmospheric profiling1 paperAtmospheric Emitted Radiance Interferometer (AERI)
measurement

Telemetric heart rate monitoring in free-ranging marmots (Sciuridae)

Surgical implantation of radio transmitters in the abdominal cavity with electrodes positioned on either side of the heart to monitor heart rate via radio telemetry during natural behaviors. Heart rat...

physiological monitoring1 paperHeart-rate radio transmitters (Telonics), Telonics TR-1-20 receiver...
measurement

Thermal demagnetization

Stepwise heating of rock specimens to progressively remove magnetic components and identify magnetic carriers through their unblocking temperature spectra.

paleomagnetism1 paperSuperconducting Rock Magnetometer 2G Enterprise 755
measurement

Total Station surveying

Multi-person protocol for high-precision surveying using Total Station equipment with millimeter accuracy capabilities

high-precision positioning1 paperTotal Station, tripods...
measurement

UAV multispectral canopy imaging

Unmanned aerial vehicle flights with multispectral camera to capture georeferenced imagery of forest canopy in five spectral bands, with radiometric calibration using reference panel and downwelling l...

remote sensing1 paperTarot T560 Sport UAS, Micasense RedEdge multispectral camera...
measurement

Video-based nestling begging behavior analysis (Passeridae)

Quantification of nestling begging intensity using scaled visual measures of mouth gape opening and postural display height from video recordings.

behavioral observation1 paperGoPro Session camera, ONN 20000 mAh external battery...
measurement

W-band polarimetric radar KDP measurement

Continuous measurement of specific differential phase (KDP) using slanted W-band polarimetric radar to detect signatures of dendritic growth and secondary ice production in snow. Radar operated at 40°...

remote sensing1 paperLIMRAD94 W-band radar, cold-temperature scanning unit
measurement

Weather station climate data integration (Pieridae)

Collection of synchronized climate measurements (temperature, wind speed, relative humidity, solar radiation) from weather stations corresponding to butterfly observation periods for correlation analy...

environmental monitoring1 paperweather station data