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Protocols

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14 protocols

computationalstandardized

Reactive transport modeling

Integrated groundwater flow and reactive transport modeling using PHT-USG coupled with MODFLOW-USG for geochemical reactions and PHREEQC for reaction modeling. Includes parameter estimation using PEST...

geochemical modeling10 papersPHT-USG software, MODFLOW-USG...
samplingstandardized

16S rRNA gene sequencing

Systematic collection of sediment samples from floodplain sites at regular depth intervals followed by DNA extraction and metagenomic sequencing to characterize microbial communities.

sediment coring9 paperssediment coring equipment, DNeasy PowerMax Soil Kit (Qiagen)...
analyticalstandardized

structure from motion

Integrates multiple spatial data layers including lidar, airborne geophysics, hyperspectral remote sensing, and satellite data to characterize hillslope properties. Computes average values and percent...

spatial data integration8 papersLidar DEM, AEM survey data...
measurementstandardized

Electrical Resistivity Tomography

Time-lapse electrical resistivity imaging using dipole-dipole array configuration to map subsurface electrical conductivity patterns and estimate soil moisture distribution across the hillslope.

geophysical6 paperselectrical resistivity tomography system, electrodes...
observationalstandardized

SNOTEL and cooperative observer networks

Comprehensive deployment of precipitation, atmospheric, and surface energy budget sensors across elevation and topographic gradients in complex terrain. Network includes core sites with full instrumen...

environmental monitoring6 papersSnow-Level Radar (SLR), precipitation gauges...
samplingstandardized

Snow pit stable isotope sampling

Systematic collection of snowpack samples across elevation gradients using snow pits dug at 10 cm increments to obtain SWE-weighted composite isotopic signatures representative of accumulated snowpack...

hydrological6 papersshovels for digging snow pits, sampling containers...
analyticalstandardized

stable isotope analysis (Plantae)

Collection and isotopic analysis of xylem and soil water to determine plant water sources using δ18O and δ2H signatures combined with Bayesian mixing model to quantify proportional contributions from ...

geochemical6 paperssealed bags, cryogenic extraction equipment...
samplingstandardized

Sanford et al. dissolved gas tracer method

Sampling of 3H and 4He environmental tracers from screened groundwater wells to constrain groundwater age distributions and validate numerical model predictions of mixing between modern and pre-modern...

groundwater geochemistry5 papersgroundwater wells, environmental tracer sampling equipment
analyticalstandardized

Endmember splitting and mixing analysis

Uses stable isotope ratios (δ²H and δ¹⁸O) of precipitation and streamflow to quantify the relative contributions of snow versus rain to streamflow and evapotranspiration through endmember mixing and s...

isotope hydrology4 papersModel 3700 automatic samplers (Teledyne ISCO, NE, USA), 2-cm mineral oil pre-filled bottles...
analyticalstandardized

Random Forest

Random Forest regression to predict ecosystem drought sensitivity from hydrological and topographic variables. Uses bootstrapped subsampling with multiple regression trees to identify key predictive v...

machine learning4 papersR software, randomForest package
computationalstandardized

metaSPAdes assembly pipeline

Standard metagenomics pipeline involving assembly with MEGAHIT, binning with multiple tools, dereplication, and taxonomic classification using GTDB-tk.

metagenomics4 papersMEGAHIT (v1.3.3), MetaBAT2 (v2.12.1)...
analyticalstandardized

DI water extractable organic carbon and nutrient extraction

Deionized water extraction of sediments following Gregorich and Carter (2007) to measure dissolved nutrients and organic carbon. Designed to minimize physical disruption and reflect carbon and nutrien...

nutrient extraction2 paperspolyethylene bags, Whatman GF/F filters (0.7 μm)...
computationalstandardized

Three-phase meteorological QA/QC workflow

A comprehensive statistical framework for quality assurance and quality control of meteorological time series data involving preliminary data exploration, quality assessment with outlier detection, an...

data processing2 papersR programming language, imputeTS package...
analytical

Strontium isotope source tracing in plant tissues

Sequential extraction and ICP-MS analysis of soil pools and plant tissues to trace nutrient sources using 87Sr/86Sr ratios. Includes mixing model calculations to quantify proportional contributions fr...

geochemical1 paperICP-MS, centrifuge...