Protocols
31 protocols
ARSTAN chronology development
Wood samples are sectioned into sub-annual increments and cellulose is extracted for oxygen and carbon isotope analysis to assess seasonal water sources and water use efficiency in trees.
Mantel test (Plantae)
Meta-analytical approach to synthesize population-level climate sensitivities across multiple species using structured population models and standardized effect sizes. Incorporates life history traits...
increment core sampling
Standard increment boring technique to extract tree cores for measuring annual ring widths, then calculating basal area increment over specific time periods to quantify stem growth.
Systematic grid demographic monitoring of aspen
Systematic establishment of gridded plots across watersheds followed by long-term monitoring of tagged individual trees for mortality and recruitment rates. Combined with environmental characterizatio...
Flow cytometry nuclear DNA content analysis (Salicaceae)
Cytotype inference using twelve multinational microsatellites with 97% correct classification for cytotype. Individual plants defined as diploid or triploid based on maximum number of alleles observed...
LI-COR gas exchange measurements (Asteraceae)
Comprehensive measurement of leaf morphological, physiological, and chemical traits including stomatal conductance, leaf mass per area, nitrogen content, and spectral properties to characterize plant ...
Multi-factor abiotic site characterization
Comprehensive measurement of soil nutrients, moisture, pH, topographic aspect, and interpolated climate variables to characterize abiotic conditions at vegetation sampling sites.
Partial Least Squares Regression
Uses hyperspectral imaging (400-1000 nm) combined with Partial Least Squares Regression to correlate spectral signatures with measured leaf traits like LMA and LWC. Enables non-destructive remote meas...
partial least squares regression (PLSR) (Salicaceae)
PLSR modeling approach using leaf spectral reflectance measurements to extrapolate functional trait values from subset of direct measurements to larger sample sizes. Ten-fold cross-validation used for...
Pika occupancy sign surveys (Mammalia)
Standardized searches for fresh pika sign including visual and auditory detection of individuals and fresh food caches (haypiles) to determine current site occupancy. Sites without initial detection r...
line-intercept technique
Systematic point sampling along transects to quantify vegetation composition and forage quality metrics. Modified from standard methods described in Wilkening et al. 2011.
Palmer Drought Severity Index (Salicaceae)
Integration of gridMET temperature data, MODIS snowmelt timing, and PARFLOW-CLM soil moisture simulations to create multi-temporal environmental predictor datasets with quantified drought metrics.
CRU TS3.1 climate dataset processing (Plantae)
Processing of gridded climate data from the CRU TS3.1 dataset with lapse rate adjustment for elevation differences between grid cells and actual study locations, validated against local meteorological...
Elemental analysis by combustion
Laboratory analysis of plant samples for nitrogen content using elemental CHNSO analyzer and water content determination through oven-drying weight loss.
ImageJ ellipsis tool analysis
Photographic analysis using ImageJ software with ellipsis tool to quantify percent vegetation coverage around each sampling point as a fraction of total photographed area.
Leaf clearing and vein density microscopy
A standardized protocol for preparing plant leaves through chemical clearing and measuring vein density using microscopy and stochastic line-intersection analysis. Leaves are dried, cleared with sodiu...
NEON Airborne Observation Platform (Salicaceae)
Airborne hyperspectral imaging (380-2500 nm) and LiDAR data collection at 1 m resolution, followed by machine learning algorithms to produce aspen cover and cytotype distribution maps.
TRY plant trait database (Plantae)
Systematic compilation and cleaning of plant trait records from multiple databases to create a comprehensive tundra plant trait dataset. Combined TRY database records with Tundra Trait Team contributi...
G-matrix analysis (Plantae)
Compilation and analysis of published plant population divergence data paired with evolvability estimates to test macroevolutionary predictions. Uses proportional divergence metrics and meta-analytica...
Leaf thermal response characterization from field observations
Field measurement of leaf temperature and air temperature relationships across multiple species and ecosystems to characterize thermal response slopes (β values). Data collection involves simultaneous...
UAV multispectral canopy imaging
Unmanned aerial vehicle flights with multispectral camera to capture georeferenced imagery of forest canopy in five spectral bands, with radiometric calibration using reference panel and downwelling l...
ASD FieldSpec3 spectroradiometry
Collection of VSWIR field spectra at leaf- and mineral-levels using an Analytical Spectral Devices FieldSpec 3 spectroradiometer with contact probe and leaf clip attachments.
Contact probe measurements
Endmember spectral measurements using contact probe attachment with internal bulb illumination for close-contact surface measurements.
Flow cytometry (Plantae)
Laboratory technique to determine ploidy level, validated against Hordeum vulgare standards.
Hyperspectral data validation
Collection of site spectra to validate airborne hyperspectral data acquired by NEON Aerial Observation Platform.
Leaf trait measurement (Plantae)
Measurement of leaf traits including nitrogen concentration, phosphorus concentration, specific leaf area, and tensile strength in African woody species.
NEON AOP Airborne Remote Sensing
National Ecological Observatory Network Airborne Observation Platform flights acquiring LiDAR, imaging spectroscopy, and high-resolution camera imagery.
SNP genotyping (Plantae)
Genotyping using a panel of 384 candidate-gene single nucleotide polymorphisms putatively associated with adaptive traits.
nested cross-validation
Statistical validation approach for model selection and parameter optimization to ensure robust performance.
standardised experimental burns
Standardised experimental burns on three types of leaf material (fresh, dried and senesced) to measure flammability parameters.
vegetation sampling with digital forms
Field observations of vegetation samples collected using tablet computers and digital forms targeting different vegetation types.
