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Protocols

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31 protocols

analyticalstandardized

ARSTAN chronology development

Wood samples are sectioned into sub-annual increments and cellulose is extracted for oxygen and carbon isotope analysis to assess seasonal water sources and water use efficiency in trees.

isotopic13 paperssanding equipment, scanner...
analyticalstandardized

Mantel test (Plantae)

Meta-analytical approach to synthesize population-level climate sensitivities across multiple species using structured population models and standardized effect sizes. Incorporates life history traits...

meta-analysis12 papersLiterature databases, Web of Science search...
measurementstandardized

increment core sampling

Standard increment boring technique to extract tree cores for measuring annual ring widths, then calculating basal area increment over specific time periods to quantify stem growth.

dendrochronology9 papersHaglöf 2-Thread Increment Borer, labeled plastic straws...
observationalstandardized

Systematic grid demographic monitoring of aspen

Systematic establishment of gridded plots across watersheds followed by long-term monitoring of tagged individual trees for mortality and recruitment rates. Combined with environmental characterizatio...

demographic monitoring6 papersGPS units for plot positioning, tree tags...
laboratorystandardized

Flow cytometry nuclear DNA content analysis (Salicaceae)

Cytotype inference using twelve multinational microsatellites with 97% correct classification for cytotype. Individual plants defined as diploid or triploid based on maximum number of alleles observed...

molecular5 papersmicrosatellite markers, DNA extraction equipment...
measurementstandardized

LI-COR gas exchange measurements (Asteraceae)

Comprehensive measurement of leaf morphological, physiological, and chemical traits including stomatal conductance, leaf mass per area, nitrogen content, and spectral properties to characterize plant ...

plant physiology5 paperssteady-state porometer (LI-COR, LI-1600M), flatbed scanner (Canon, LIDE 220)...
measurement

Multi-factor abiotic site characterization

Comprehensive measurement of soil nutrients, moisture, pH, topographic aspect, and interpolated climate variables to characterize abiotic conditions at vegetation sampling sites.

environmental monitoring5 paperssoil sampling tools, pH meter...
analyticalstandardized

Partial Least Squares Regression

Uses hyperspectral imaging (400-1000 nm) combined with Partial Least Squares Regression to correlate spectral signatures with measured leaf traits like LMA and LWC. Enables non-destructive remote meas...

remote sensing5 papersSOC 710 hyperspectral camera, digital camera...
analyticalstandardized

partial least squares regression (PLSR) (Salicaceae)

PLSR modeling approach using leaf spectral reflectance measurements to extrapolate functional trait values from subset of direct measurements to larger sample sizes. Ten-fold cross-validation used for...

spectral modeling5 papersASD FieldSpec HandHeld 2 spectroradiometer, leaf clip
samplingstandardized

Pika occupancy sign surveys (Mammalia)

Standardized searches for fresh pika sign including visual and auditory detection of individuals and fresh food caches (haypiles) to determine current site occupancy. Sites without initial detection r...

demographic monitoring4 papersvisual and auditory detection methods, exhaustive talus searching methods
samplingstandardized

line-intercept technique

Systematic point sampling along transects to quantify vegetation composition and forage quality metrics. Modified from standard methods described in Wilkening et al. 2011.

vegetation monitoring4 papers
measurement

Palmer Drought Severity Index (Salicaceae)

Integration of gridMET temperature data, MODIS snowmelt timing, and PARFLOW-CLM soil moisture simulations to create multi-temporal environmental predictor datasets with quantified drought metrics.

environmental monitoring3 papersgridMET data product, MODIS 8-d composite snow-cover product...
analyticalstandardized

CRU TS3.1 climate dataset processing (Plantae)

Processing of gridded climate data from the CRU TS3.1 dataset with lapse rate adjustment for elevation differences between grid cells and actual study locations, validated against local meteorological...

climate data processing2 papersCRU TS3.1 climate dataset, local meteorological stations
analyticalstandardized

Elemental analysis by combustion

Laboratory analysis of plant samples for nitrogen content using elemental CHNSO analyzer and water content determination through oven-drying weight loss.

chemical analysis2 papers60 g spring scale (PESOLA AG, Rebmattli 19, CH-6340 Baar, Switzerland), paper bags...
analytical

ImageJ ellipsis tool analysis

Photographic analysis using ImageJ software with ellipsis tool to quantify percent vegetation coverage around each sampling point as a fraction of total photographed area.

image analysis2 paperscamera, ImageJ software...
laboratorystandardized

Leaf clearing and vein density microscopy

A standardized protocol for preparing plant leaves through chemical clearing and measuring vein density using microscopy and stochastic line-intersection analysis. Leaves are dried, cleared with sodiu...

morphological measurement2 papersdrying oven, sodium hydroxide solution...
measurementstandardized

NEON Airborne Observation Platform (Salicaceae)

Airborne hyperspectral imaging (380-2500 nm) and LiDAR data collection at 1 m resolution, followed by machine learning algorithms to produce aspen cover and cytotype distribution maps.

remote sensing2 papersNEON Airborne Observation Platform, hyperspectral sensors (380-2500 nm)...
analyticalstandardized

TRY plant trait database (Plantae)

Systematic compilation and cleaning of plant trait records from multiple databases to create a comprehensive tundra plant trait dataset. Combined TRY database records with Tundra Trait Team contributi...

database synthesis2 papersTRY database, TTT contributor datasets...
analytical

G-matrix analysis (Plantae)

Compilation and analysis of published plant population divergence data paired with evolvability estimates to test macroevolutionary predictions. Uses proportional divergence metrics and meta-analytica...

comparative analysis1 paperliterature databases, statistical software...
observational

Leaf thermal response characterization from field observations

Field measurement of leaf temperature and air temperature relationships across multiple species and ecosystems to characterize thermal response slopes (β values). Data collection involves simultaneous...

thermal measurement1 papertemperature measurement devices for leaf and air temperature
measurement

UAV multispectral canopy imaging

Unmanned aerial vehicle flights with multispectral camera to capture georeferenced imagery of forest canopy in five spectral bands, with radiometric calibration using reference panel and downwelling l...

remote sensing1 paperTarot T560 Sport UAS, Micasense RedEdge multispectral camera...
measurement

ASD FieldSpec3 spectroradiometry

Collection of VSWIR field spectra at leaf- and mineral-levels using an Analytical Spectral Devices FieldSpec 3 spectroradiometer with contact probe and leaf clip attachments.

0 papers
measurement

Contact probe measurements

Endmember spectral measurements using contact probe attachment with internal bulb illumination for close-contact surface measurements.

0 papers
analytical

Flow cytometry (Plantae)

Laboratory technique to determine ploidy level, validated against Hordeum vulgare standards.

0 papers
analytical

Hyperspectral data validation

Collection of site spectra to validate airborne hyperspectral data acquired by NEON Aerial Observation Platform.

0 papers
measurement

Leaf trait measurement (Plantae)

Measurement of leaf traits including nitrogen concentration, phosphorus concentration, specific leaf area, and tensile strength in African woody species.

0 papers
observational

NEON AOP Airborne Remote Sensing

National Ecological Observatory Network Airborne Observation Platform flights acquiring LiDAR, imaging spectroscopy, and high-resolution camera imagery.

0 papers
analytical

SNP genotyping (Plantae)

Genotyping using a panel of 384 candidate-gene single nucleotide polymorphisms putatively associated with adaptive traits.

0 papers
computational

nested cross-validation

Statistical validation approach for model selection and parameter optimization to ensure robust performance.

0 papers
experimental

standardised experimental burns

Standardised experimental burns on three types of leaf material (fresh, dried and senesced) to measure flammability parameters.

0 papers
sampling

vegetation sampling with digital forms

Field observations of vegetation samples collected using tablet computers and digital forms targeting different vegetation types.

0 papers