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Protocols

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12 protocols

analyticalstandardized

Forest inventory plot sampling

Uses full-waveform LiDAR returns processed through adaptive deconvolution and individual tree detection algorithms to map forest structure metrics including tree density, height distributions, and bas...

remote sensing15 papersOptech Gemini discrete LiDAR sensor, waveform digitizer...
analyticalstandardized

ARSTAN chronology development

Wood samples are sectioned into sub-annual increments and cellulose is extracted for oxygen and carbon isotope analysis to assess seasonal water sources and water use efficiency in trees.

isotopic13 paperssanding equipment, scanner...
measurement

NDVI remote sensing

Time-lapse UAV surveys using RGB and multispectral cameras to monitor vegetation indices (NDVI, GCC) and plant height changes across a hillslope transect during growing seasons.

remote sensing9 papers3DR Solo UAV platform, Sony α6000 digital camera...
measurementstandardized

increment core sampling

Standard increment boring technique to extract tree cores for measuring annual ring widths, then calculating basal area increment over specific time periods to quantify stem growth.

dendrochronology9 papersHaglöf 2-Thread Increment Borer, labeled plastic straws...
analyticalstandardized

Chloroform fumigation extraction

Standard chloroform fumigation direct extraction technique for measuring soil microbial biomass, combined with soil chemistry analysis and enzyme activity assays.

biogeochemistry4 paperschloroform fumigation extraction setup, soil chemistry analysis equipment
analyticalstandardized

Illumina paired-end sequencing

Standard Illumina library preparation using Nextera XT kit followed by paired-end sequencing on HiSeq 2500 platform to generate comprehensive metagenomic datasets from phylloplane microbial communitie...

molecular4 papersNextera XT kit, SPRI beads...
samplingstandardized

automated water sampling

Autonomous sampling system using osmotic pumps to continuously collect water samples over extended periods for chemical analysis. Tubing inlets placed at different depths collect time-integrated sampl...

autonomous chemical sampling4 papersOsmoSamplers, copper small-bore tubing...
measurementstandardized

Heat pulse sap flow measurement (Plantae)

Continuous measurement of tree water transport using thermal dissipation sensors with temperature measurements at multiple depths in sapwood to calculate sap velocity via heat pulse methodology.

physiological monitoring2 paperssap velocity sensors manufactured by ICT International, drill guide...
sampling

Airborne LiDAR Remote Sensing

Data acquired using a Riegl Q1560 dual-channel LiDAR system mounted on a Piper Navajo aircraft. Survey complied with USGS QL1 standard with point density more than 8 pulses per m2.

0 papers
analytical

Cellulose isotope analysis (Plantae)

Cellulose extraction using Brendel method followed by pyrolysis at 1400°C and isotopic ratio measurement by GC-IRMS.

0 papers
observational

NEON AOP Airborne Remote Sensing

National Ecological Observatory Network Airborne Observation Platform flights acquiring LiDAR, imaging spectroscopy, and high-resolution camera imagery.

0 papers
analytical

Stable Water Isotope Analysis

Measurement of hydrogen and oxygen isotope ratios using Off-Axis Integrated Cavity Output Spectrometer with auto-sampler and heated injector block. Results reported in δ-notation relative to Vienna St...

0 papers