Protocols
17 protocols
Specific Leaf Area (SLA)
Comprehensive measurement of vegetative traits including specific leaf area, trichome density, water use efficiency, and percent water content from field-collected leaves using scanning, drying, weigh...
5TE soil sensor monitoring
Continuous automated monitoring of soil temperature, moisture, and gas concentrations at multiple depths using sensor arrays. Provides high-resolution temporal data on soil microenvironmental conditio...
HOBO sensor environmental monitoring
Continuous collection of local weather data at 5-minute intervals throughout growing seasons to capture fine-scale environmental variation affecting disease dynamics.
reflectance spectrophotometry
Standardized measurement of floral reflectance spectra using fiber optic probe positioned at fixed distance and angle from flower surface. Spectra collected across 300-700 nm range for input into visu...
Li-Cor 6400 photosynthesis measurement
A novel approach to measure light response curves for entire plant communities rather than individual plants using tent-based gas exchange measurements across multiple light levels. This method contro...
Beaver pond habitat characterization
Multi-parameter assessment of beaver pond physical characteristics including area, depth, flow velocity, and beaver activity indicators to control for habitat differences in community analyses.
SPAD chlorophyll measurement
Measurement of chlorophyll fluorescence using LI-600 to assess photosynthetic efficiency by quantifying light emission from chlorophyll molecules excited by solar radiation.
Nondestructive plant size measurement for biomass prediction (Asteraceae)
Systematic measurement of plant morphological characteristics (leaf number, leaf area, stalk count, etc.) before plant extraction to develop predictive relationships with total plant biomass. Differen...
Diurnal thermal videography of plant communities
Continuous infrared thermal imaging of vegetation plots at 5-second intervals from sunrise to sunset using elevated FLIR cameras to capture leaf temperature dynamics across environmental gradients.
Elevation gradient flower spectrophotometry
Systematic collection and spectrophotometric analysis of flowers across elevation gradients to quantify color variation. Targets pollinator-visible flower regions and converts reflectance to pollinato...
Grid-based root presence-absence quantification from soil pit photographs (Plantae)
Photographs of soil pit faces are overlaid with 1×1 cm grids to systematically score presence or absence of fine and coarse roots in each grid cell, providing depth-resolved estimates of root spatial ...
GIS-based riparian proximity measurement (Picidae)
Measurement of distances from bird survey points to nearest riparian features using aerial photography, field measurements, and GIS analysis to quantify habitat proximity effects.
bird banding (Passerellidae)
Standard measurements of bird morphology including wing chord, tail length, tarsus length, and body condition assessment. Birds banded with color combinations and USGS bands for individual identificat...
Cavity nest site characterization (Aves)
Comprehensive measurement of nest tree characteristics and landscape context including tree size, nest height, cavity orientation, and distances to key habitat features. Multi-scale habitat characteri...
Grid-based topographic measurement
Systematic measurement of slope and aspect at grid cell centers using compass and clinometer with clipboard to minimize micro-scale surface variation effects.
Ion exchange resin strips
Mixed-bed ion-exchange resin bags deployed at 5 cm soil depth to assess NO3-N and NH4-N availability. Resins are extracted with KCl and analyzed using flow injection autoanalyzer.
Riparian willow structural complexity assessment (Parulidae)
Combined vertical (Robel pole) and horizontal (line intercept) measurements to quantify willow habitat structural complexity including height diversity, average height, patchiness, frequency and cover...
