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Hidden Markov Models

Scope: molecular
Papers: 1 | Mentions: 1

Local Knowledge Graph (37 entities)

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Definition

Statistical models used to identify and characterize gene functions from metagenomic sequences

Related Terms (1)

HMM

Publications (1)

article

Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock

2019Ecology and Evolutioncentral

Related Concepts (10)

metagenome-assembled genome

measurement4 shared papers

sulfate reduction

process2 shared papers

hillslope-riparian gradient

process2 shared papers

carbon cycling

process2 shared papers

proximity to stream

measurement2 shared papers

biogeochemical reactions

process2 shared papers

Heavy-metal contamination

phenomenon2 shared papers

anaerobic methane oxidation

process1 shared paper

pyrite oxidation

process1 shared paper

mountain hydrology

framework1 shared paper

Frequently Associated Species

Nitrososphaera sp.

1 paper

Desulfobacca acetoxidans

Syntrophaceae1 paper

Geobacter spp.

1 paper

Desulfuromonas sp.

1 paper

Thaumarchaeota

1 paper

Bathyarchaeota

1 paper

Euryarchaeota

1 paper

Alphaproteobacteria

1 paper

Gammaproteobacteria

1 paper

Shewanella oneidensis

1 paper