Filtered by neighborhood:Watershed Hydrology, Soil Biogeochemistry, and Floodplain Microbial EcologyClear filter
Protocols
3 protocols
computationalstandardized
metaSPAdes assembly pipeline
Standard metagenomics pipeline involving assembly with MEGAHIT, binning with multiple tools, dereplication, and taxonomic classification using GTDB-tk.
computationalstandardized
Three-phase meteorological QA/QC workflow
A comprehensive statistical framework for quality assurance and quality control of meteorological time series data involving preliminary data exploration, quality assessment with outlier detection, an...
computational
Viral sequence detection and vOTU clustering
Computational pipeline using VirSorter2 and CheckV for viral sequence identification, followed by clustering into viral operational taxonomic units and taxonomic/host prediction.