RNA-seq differential expression analysis (Sciuridae)

Subcategory: molecular

Papers: 1 | Mentions: 1

Local Knowledge Graph (15 entities)

Loading graph...

Description

Bioinformatics pipeline for processing RNA-seq reads including quality control, mapping to reference genome, and statistical analysis of differential gene expression using mixed models.

Typical Equipment

Trim Galore
TopHat2 v2.1.0
EMMERML
LIMMA package
R version 3.3.1

Output Measurements

differentially expressed genes
fold changes
q-values

Papers Using This Protocol (1)

article

Gene expression shifts in yellow-bellied marmots prior to natal dispersal

2019Behavioral Ecologyusing