PoolSeq nucleotide diversity analysis (Pieridae)

Subcategory: population genetics

Papers: 1 | Mentions: 1

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Description

Population genetic analysis using pooled sequencing data to estimate nucleotide diversity across chromosomes and validate sex chromosome identity through coverage analysis.

Typical Equipment

NextGenMap
Samtools v.1.0
PoPoolation (v.1.2.2)

Output Measurements

nucleotide diversity
coverage ratios
variable site counts

Papers Using This Protocol (1)

article

The genome of the Margined White butterfly (Pieris macdunnoughii): sex chromosome insights and the power of polishing with PoolSeq data

2021Genome Biology and Evolutionusing