Synteny-based chromosome scaffolding (Pieridae)

Subcategory: genome assembly

Papers: 1 | Mentions: 1

Local Knowledge Graph (18 entities)

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Description

Using synteny analysis with a closely related reference genome to arrange contigs into chromosome-level scaffolds using MUMmer alignment and RagTag scaffolding.

Typical Equipment

nucmer (MUMmer4, v.4.0.0beta2)
RagTag

Output Measurements

pseudo-chromosomal assembly
synteny blocks
chromosome assignments

Papers Using This Protocol (1)

article

The genome of the Margined White butterfly (Pieris macdunnoughii): sex chromosome insights and the power of polishing with PoolSeq data

2021Genome Biology and Evolutionusing