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GATK variant calling (Pieridae)

Subcategory: genomic analysis
Papers: 1 | Mentions: 1

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Description

Bioinformatics pipeline for processing raw sequencing reads through quality filtering, mapping, variant calling, and SNP filtering using GATK v4.0 and associated tools.

Typical Equipment

  • fastp
  • bwa mem
  • GATK v4.0
  • VCFtools

Output Measurements

  • high-quality SNP dataset

Papers Using This Protocol (1)

article

Patterns of genetic variation and local adaptation of a native herbivore to a lethal invasive plant

2024Molecular Ecologyusing