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Maximum likelihood phylogenetic analysis

Subcategory: phylogenetics
Papers: 3 | Mentions: 8

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Description

Maximum likelihood phylogenetic analysis of full genome sequences using MUSCLE alignment and Tamura-Nei evolutionary model to determine relationships between outbreak isolates and assess overwintering versus new incursion.

Typical Equipment

  • MegaX software
  • MUSCLE alignment software
  • FigTree v1.4.3

Output Measurements

  • phylogenetic trees
  • genetic similarity percentages
  • evolutionary relationships

Papers Using This Protocol (3)

article

Metagenome-assembled genomes for oligotrophic nitrifiers From a mountainous gravelbed floodplain

2025Environmental Microbiologyusing
article

Review of Vesicular Stomatitis in the United States with Focus on 2019 and 2020 Outbreaks

2021Pathogensusing
article

Metabolism of toxic sugars by the bee gut symbiont <i>Gilliamella apicola</i>

2017mBiousing