Wildlife Genomics and Reference Genome Assembly
develops genomic resources and sequencing techniques for wildlife species, creating reference genomes that enable conservation genetics and evolutionary studies of animals in mountain ecosystems.
Concept (5) →
genome annotation
Computational identification and labeling of genes and other functional elements in genome sequences
transcriptomics
The study of the complete set of RNA transcripts produced by the genome under specific circumstances
reference-guided assembly
sex chromosome evolution
Evolutionary changes in sex-determining chromosomes including fusion events and differentiation from autosomes
fSCA
Author (16) →
Kenneth L. Jones
Jennifer A. Fike
Cynthia S. Jones
Daren C. Card
Todd A. Castoe
Matthew K. Fujita
Jacobo Reyes-Velasco
Drew R. Schield
Robert P. Ruggiero
Diana F. Tomback
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Dataset (17) →
Sage-Grouse de novo assembly
De novo assembly of the Gunnison Sage-Grouse using CLC Genomics Workbench. Includes CLC assembly report.
Data from: Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies
As a greater number and diversity of high-quality vertebrate reference genomes become available, it is increasingly feasible to use these references t...
Sage-Grouse 2x reference-guided genome
2x consensus Sage-Grouse genome from reference-guided assembly using the Chicken genome as reference. Assembly statistics report is included.
Sage-Grouse 1x reference-guided genome
1x consensus Sage-Grouse genome from reference-guided assembly using the Chicken genome as reference. Assembly statistics report is included.
Sage-Grouse to Chicken chromosome annotation
Chromsome annotation of the Sage-Grouse using the Chicken genome. Used 1x reference-guided assembly and blast, and assumed high synteny between specie...
Sage-Grouse 5x reference-guided genome
5x consensus Sage-Grouse genome from reference-guided assembly using the Chicken genome as reference. Assembly statistics report is included.
Sage-Grouse mitochondrial assembly and MITOS annotation
Reference-guided assembly of the Sage-Grouse mitochondrion using consensus Galliformes mitochondrial sequence as guide. Includes MITOS annotation.
Data from: Z chromosome divergence, polymorphism, and relative effective population size in a genus of lekking birds
Sex chromosomes contribute disproportionately to species boundaries as they diverge faster than autosomes and often have reduced diversity. Their hemi...
Expected-heterozygosity-FST-between-species
Excel spreadsheet comparing expected heterozygosity and FST at SNP loci, along with actual base counts from reads. Comparison is between the Greater S...
Data from: Genomic single-nucleotide polymorphisms confirm that Gunnison and Greater sage-grouse are genetically well differentiated and that the Bi-State population is distinct
Sage-grouse are iconic, declining inhabitants of sagebrush habitats in western North America, and their management depends on an understanding of gene...
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Genomic and Transcriptomic Analysis of the Whirling Disease-Resistant Gunnison River Rainbow Trout - Supplementary Data
Supplementary tables and figures
HC.auto.3pops
This file is a text file in Arelquin input format. It contains autosome SNP genotypes for three groups. Two groups of C. urophasianus (one is GRSG whi...
Z.3pops.4.arlequin
This is a text file in Arlequin input format and represents Z chromosome data for three groups (2 C. urophasianus - one (GRSG) is the southern part of...
Sample collection information and whole genome data for Greater and Gunnison Sage-grouse range generated in the Molecular Ecology Lab during 2015-2018
This dataset contains sample collection information for whole genome sequences of Gunnison and Greater Sage-grouse. These data were collected in order...
Per-Sample TPM with Annotations
Metatranscriptomic data generated from soil collected at the East River watershed, Crested Butte, CO. Normalized by TPM. Annotations included, and lab...
Per-Sample TPM with Annotations
Metatranscriptomic data generated from soil collected at the East River watershed, Crested Butte, CO. Normalized by TPM. Annotations included, and lab...
Genetic variation within the North American Sage-grouse genus Centrocercus (class Aves)
Evaluation of genetic differentiation within the Sage-grouse genus Centrocercus. Three geographically distinct samples of North American Sage-grouse, ...